RNA id: TU2636138


Basic Information

Item Value
RNA id TU2636138
length 2680
lncRNA type inter_gene
GC content 0.37
exon number 4
gene id G2304399
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 19273987 ~ 19276865 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttacatggtccttctagCCGTATTTAGTGACCAATagtttttacatggtccttctagccggatttagtgaccaatagtttttacatggtccttctagccggatttagtgaccaatagtttttacatggtccttctagCCAGATTTAGTGACCAATAGTTTTTACATGGTCCGTAATTTCTCTGGATTTAGTGACCAATagtttttacatggtccttctagCCGGATTTAGTGACAAATAGTTTTTACATGGTCCTTAATTTCTCTGGATTTAGTGACCAATagtttttacATGGTCCTTCTAGCCGGATTAGTGACCAATAGttttacatggtccttctagACGGATTTTGTGACCAATagtttttacatggtccttctagCCGTATTTAGTGACCAATAGTTTTTACATGGTCCTTAATTTCTCTGGATTTAGTGACCAATAGTTTCTACATGGTCCTTCTAGCCAGATTTAGTGACCAATAGTTTTTACATGGTCCGTAATTTCTCTGGATTTAGTGACCAATAGTTTTGACATGGTCCTTCTAGCCGGATTTAGTGACCAATAGTTTTTACATGGTCCTTAATTTCTCTGGATTTAGTGACCAATagtttttacatggtccttctagccggatttagtgaccaatagtttttacatggtccttctagccggatttagtgaccaatagtttttacatggtccttctagCCCGATTTAGTGACCAATagtttttacatggtccttctagccggatttagtgaccaatagtttttacatggtccttctagccggatttagtgaccaatagtttttacatggtccttctagCCGGATTTACTGACCAATCGTTTTTACATGGTCCTTAATTTCTCTGGATTTAGTGACCAATagtttttacatggtccttctagccggatttagtgaccaatagtttttacatggtccttctagCTGTATTTAGTGACCAATagtttttacatggtccttctagCCGTATTTAGTGACCAATAGTTTTTACATTGTCCTTCTAGCTGTATTTAGTGACCAATAGTTTTTACATAGTCCTTCTAGCTGTATTTAGTGACCAATagtttttacatggtccttctagCCGTATTTAGTGACCAATagtttttacatggtccttctagccggatttagtgaccaatagtttttacatggtccttcatttCTCCTGATTTAGTGACCAATagtttttacatggtccttctagccggatttagtgaccaatagtttttacatggtccttctagCCGGATTTAGTGACCAATAGTTTTTACATGGTCCGTAATTTCTCTGGATTTAGTGACCAATAGTTTTTACATGGTCCGTAATTTTTCCGGATTTAGTGACCAATagtttttacatggtccttctagCCGGATTAGTGACCAATAGTTTTTACATGGTCCTTAATTTCTCTGGATTTAGTGACCCATagtttttacatggtccttctagccggatttagtgaccaatagtttttacatggtccttctagCTGTATTTAGTGACCAATAGTTTTTACATGGTCCGTAATTTCTCTGGATTTAGTGACCAATAGTTTTTACATGGTCCGTAATTTTTCCGGATTTAGTGACCAATagtttttacatggtccttctagccggatttagtgaccaatagtttttacatggtccttctagCCGGATTTAGTGACTAATAGTTTTTACATGGTCCTTAATTTCTCTGGATTTAGTGACCAATagtttttacatggtccttctagccggatttagtgaccaatagtttttacatggtccttctagCCGGATTTACTGACCAATCGTTTTTACATGGTCCTTAATTTCTCTGGATTTAGTGACCAATagtttttacatggtccttctagccggatttagtgaccaatagtttttacatggtccttctagCTGTATTTAGTGACCAATAGTTTTAACATGGTCCTTCTAGCCGTATTTAGTGACCAATAGTTTTTACATTGTCCTTCTAGCTGTATTTAGTGACCAATAGTTTTTACatggtccttctagCCGGATTTAGTGACCAATAGTTTTTACATGGTCCGTAATTTCTCCTGATTTAGTGACCAATagtttttacatggtccttctagccggatttagtgaccaatagtttttacatggtccttctagCCCGATTTAGTGACCAATAGTTTTTACATGGTCCGTAATTTCTCTGGATTTAGTGACCAATAGTTTTTACATGGTCCGTAATTTTTCCGGATTTAGTGACCAATagtttttacatggtccttctagCCGGATTTAGTGACCAATAGTTTTTACATGGTCCTTAATTTCTCTGGATTTAGTGACCCATAGTTTTTAAATGGTCCTTCTAGCCGGATTTAGTGACCCATagtttttacatggtccttctagccggatttagtgaccaatagtttttacatggtccttctagCTGTATTTAGTGACCAATAGTTTTTACATGGTCTGTAATTTCTCTGGATTTAGCGACCAATAGTTTTTACATACAGAATAGCTCAAAACTAATAATTGAAAATGACACATTACCCAATGGATGATGATCATGTACCCCTATTTTGAATGTGGAGGTTCAGCTGCTCCATTTGCTACATTGCTCAGGCTACAGTATGCTCATCATCACATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2636071 lncRNA upstream 125777 19145056 ~ 19148210 (+) True G2304335
TU2636062 lncRNA upstream 127817 19132005 ~ 19146170 (+) True G2304326
TU2636017 lncRNA upstream 217706 19056071 ~ 19056281 (+) True G2304286
TU2636016 lncRNA upstream 217920 19055773 ~ 19056067 (+) True G2304285
TU2635656 lncRNA upstream 218788 19054997 ~ 19055199 (+) True G2303995
TU2636175 lncRNA downstream 58353 19335218 ~ 19344815 (+) True G2304434
TU2636238 lncRNA downstream 177876 19454741 ~ 19455451 (+) True G2304491
TU2636310 lncRNA downstream 324943 19601808 ~ 19602812 (+) True dennd3a
TU2636347 lncRNA downstream 391309 19668174 ~ 19758204 (+) True G2304585
TU2636418 lncRNA downstream 477292 19754157 ~ 19754686 (+) True G2304651
XM_021560023.2 mRNA upstream 149913 19119951 ~ 19124074 (+) True scrt1a
XM_021560021.2 mRNA upstream 232866 19022375 ~ 19041121 (+) False LOC110488050
XM_021560020.2 mRNA upstream 232866 19022383 ~ 19041121 (+) False LOC110488050
XM_021560022.2 mRNA upstream 232866 19023008 ~ 19041121 (+) True LOC110488050
XM_036971187.1 mRNA upstream 257573 18998639 ~ 19016414 (+) False LOC110488049
XM_036970734.1 mRNA downstream 77313 19354178 ~ 19379095 (+) False dgat1a
XM_021560026.2 mRNA downstream 77314 19354179 ~ 19379095 (+) False dgat1a
XM_036971445.1 mRNA downstream 107719 19384584 ~ 19429517 (+) True trpn1
XM_021560030.2 mRNA downstream 190965 19467830 ~ 19539008 (+) False LOC110488054
XR_002468338.2 mRNA downstream 190965 19467830 ~ 19539008 (+) False LOC110488054
TU2635622 other upstream 258394 19001342 ~ 19015593 (+) False LOC110488049
TU2635466 other upstream 490960 18777345 ~ 18783027 (+) True G2303854
TU2633200 other upstream 2080870 17186565 ~ 17193117 (+) True G2301841
TU2632933 other upstream 2439602 16827065 ~ 16834385 (+) True LOC110488022
TU2632885 other upstream 2485448 16785368 ~ 16788539 (+) False LOC110488019
TU2636184 other downstream 77346 19354211 ~ 19359789 (+) True dgat1a
TU2636452 other downstream 551352 19828217 ~ 19829961 (+) True G2304678
TU2637856 other downstream 1276468 20553333 ~ 20553684 (+) True G2305956
TU2638086 other downstream 1536324 20813189 ~ 20814189 (+) False G2306173
TU2638087 other downstream 1536324 20813189 ~ 20814298 (+) True G2306173

Expression Profile