RNA id: TU2636333


Basic Information

Item Value
RNA id TU2636333
length 2953
lncRNA type antisense_over
GC content 0.41
exon number 3
gene id G2304575
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 19784584 ~ 19788459 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGCCAGTTCAGTTTCTTTGATTTTATTTGTTACAAAAACTGGTTTAGTCGAAAAGACCGAAGCCCATGTCGTCATCGGAACCCTCCTCTGActcttccttcttctcctctttcttctcctcctccttggcTGTAATGCAGGAAAACAAGGTAAGGCATCAGGACACGTACCATGAAAGATGTACAGGAATTAAACTGACAAATTACCACAATGTTTGATTTAGGTGAAATAAACCCATTGGTGACAAACTGGGTAAATAAAGGGAAAGCCACTGCTGTAGTGAAAATCAGGCTACTATCACCGGCCTGGCCGGTGCTTGCAAGCACCAGAGACGTTGGTCGTGGGCGTAACAGAATAAAGAACTGATAAGCGCTGGCTCAAGAGACCATGCTCAGGGTTCACACAGACAGTGGCTATTTGAGTAGTGATGAGCAGAGTTTTGGGACATGCCTACTGTTGAACACATTTCCTATACTGCTTAATGACTAATGTATTTTTATTGGGCATTTGAGAATATGCTACGACTGGCAGCTTTGGTGTCGGGAGAATGGCCGGGAGGGCTGTATGAGGAAAACGGATTATGTGCACAAGCACAATACACATCACATCTAATTTTAGTCCAGTCCAAGTCTGCCATGTACATTTTTACATGGTAGGAGTGTAAAATTAGTTTGACAGGTGCATGCAGTTTGAGCAAGAAAATAAATGCTGCGCATATATTTCATACGAATGGCCTATATGTATCAACAAAGCTATACATTGTTAATTAATTGAAGTTAATCACCAAATACATCAGTTTAATTAAATATTCAAAAAAGTACTGTGCCTAGGCCCATTTAATGAGACTTGGGCTCTAAAAGTGCATCCCCAATTCTCCACCGAGCTGAACTTTTTGGAAATGGCAAGTTCACTTTCTCATCCATAATGCATCTCTAGTGCAGCGCGCTGTTCAGCAGCTCACAGCGGGATTGGGGGAATTTTCATGAGGGACATTGAAAGTGGATCACTAAAATAAAGATTATGATCACACAATTTAAAAATGGGGACATCTACATATTTGGCAGCCAAGCACGAGTTATCATTGTAGCTTATAATTGTCTAGACTAGAGGTTGACTGattatggtcctccaataatcagcatcagcgttgaaaaatcataatcggtcaacctctagtctaGACAAtatataataatgacaattacaacactgaatgaacacttataaATGAAacacgttcaatttggtttaaataatacagtgttggagaagtaaaagtgcaatatgtgccatgtaaaaaagctaacatttaagttccttgctgaGAACATAAGAAAGCGGGTGGTTCCTttaaacatgagtcttcaatattcccagttaagaagttttaggttgtagctattataggaattataggactatttctctctgaaccatttgtatttcatataccttcgactattggatgttcttataggcactatagtattgccagcctcatctcgggagtcgATAGGATTGAAgtcaaacagcgcaatgcttgaagcacagcgaagagctgctggcaaatgcaggaaagtgctgtttgactgaatgcttacgagcctgctgctgcctaccaccgctcagtcagactgctctatcaaatcatagacttaattctaATATAATatcagaaatacgagccttaggtcattaatacggtcaaatccggaaactatcattttggaaacaaaacgtttattctttcagtgaaatacggaaccgttctgtattttaatCCAACAGGTGGCATctttaagtctaaatattgctgttacattgcacaaccttcaatgttataattatgtaaaattctggaaaattaattacggtctttgttaggaagaaatggtcttcacagttcgcaatgagccaggcggcccaaactgttgcatataccctgactccaattacactgaacgcaagagaagtgacacaatttccctagttaaaataaattaatgttagcaggcaatattaactaaatatgcagatttttaaaaaaaaatgatatatttacttgtgtattgattttaagaaatgcattgatgtttatggttaggtacacattagCGCAACGACTGTGCTGTTTTtgcaaatgcgcttgttaaatcatcacccgtttggcgacgtaggctgtgattcgatgataaacaGGCaacgcattgattatatgcaacgcaagacaagctagataaactcaaccatgtgtagttaactagtgattatgttaagattgattgtctTTTTTAAATAAGTTTAATGAttgctagcaacttaccttgtcAGCCTGCCACACATTCTCCCAGTGGAGTGCAAcgtaatcggcatccaaaaacgcagattaccgattgttatgaaaactagaaaacggccctaattaatcggtcgacctctagtctagacATGAATATATTCATGCCTTGAATAAAAACCTCCAGGTTTCTATCACAAAATAATTACGCAACCAACTGCTCTAATACTATCCCTGTCCAAACAAGGCCTTCGTTACCTGGTGCGTCTGCAGCAGGTGCAGCGCCTCCAGCGGCAGGTGCAGCTCCACCACCTGCACCCACGTTGCAGATCAGGCTGCCAATGTCTACGCTGGCCAGGGCCTGTTACACCTTGGAGAACAGACTGGGCCAGAAAGGCTCAATCGTCACATTGGCAGCCTTGATGAGAGCCATCAGTTTGTCTTGTGACCGTGACTTCATCATCGTGGAGGATGAGGGCAGAGTAAATACAAGCGAGTTCAGATACAGATGCCATCTTTCTATGTATATTTTATAGTTTGGGCGTCGGATGCCTAATTTTGGTTGTGCTAGTCGCCGGATTCAGGGCCTTAGCTTCAAAAGAAGAACCAAGCACCTTAGGCACGTTGACTTACTACTTAGACTTTAGCGGAAAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2636347 lncRNA upstream 26380 19668174 ~ 19758204 (+) True G2304585
TU2636418 lncRNA upstream 29898 19754157 ~ 19754686 (+) True G2304651
TU2636310 lncRNA upstream 181772 19601808 ~ 19602812 (+) True dennd3a
TU2636238 lncRNA upstream 329133 19454741 ~ 19455451 (+) True G2304491
TU2636175 lncRNA upstream 439769 19335218 ~ 19344815 (+) True G2304434
TU2636426 lncRNA downstream 4811 19793270 ~ 19793691 (+) True G2304658
TU2636428 lncRNA downstream 5454 19793913 ~ 19795053 (+) False G2304659
TU2636427 lncRNA downstream 5690 19794149 ~ 19795081 (+) True G2304659
TU2636477 lncRNA downstream 94726 19883185 ~ 19924959 (+) True G2304703
TU2636592 lncRNA downstream 272208 20060667 ~ 20061476 (+) True G2304816
XM_036971802.1 mRNA upstream 145 19669842 ~ 19784439 (+) False ptk2aa
XR_005041341.1 mRNA downstream 205683 19994142 ~ 20001374 (+) True LOC118946489
XR_005041417.1 mRNA downstream 926610 20715069 ~ 20719092 (+) False LOC118946542
XM_021560045.2 mRNA downstream 1414633 21203092 ~ 21205078 (+) False ccdc127b
XM_036971420.1 mRNA downstream 1434462 21222921 ~ 21229758 (+) False LOC110488068
XM_021560050.2 mRNA downstream 1434462 21222921 ~ 21231008 (+) False LOC110488068
TU2636184 other upstream 424795 19354211 ~ 19359789 (+) True dgat1a
TU2635622 other upstream 768991 19001342 ~ 19015593 (+) False LOC110488049
TU2635466 other upstream 1001557 18777345 ~ 18783027 (+) True G2303854
TU2633200 other upstream 2591467 17186565 ~ 17193117 (+) True G2301841
TU2632933 other upstream 2950199 16827065 ~ 16834385 (+) True LOC110488022
TU2636452 other downstream 39758 19828217 ~ 19829961 (+) True G2304678
TU2637856 other downstream 764874 20553333 ~ 20553684 (+) True G2305956
TU2638086 other downstream 1024730 20813189 ~ 20814189 (+) False G2306173
TU2638087 other downstream 1024730 20813189 ~ 20814298 (+) True G2306173
TU2638628 other downstream 1518973 21307432 ~ 21311878 (+) False LOC110488072

Expression Profile