RNA id: TU2636426


Basic Information

Item Value
RNA id TU2636426
length 422
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G2304658
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 19793270 ~ 19793691 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTTAACAAAATTTAACATCACACATTTTCGCATTCAAAAGCACATCAATGTTTCCCATATTTGGCACCATCATCTCATGGTCTTCCTGTTCTAATACTTTACAAGGTCAAATACAAACATAAAAGCAGAGATCTTCTGAATGATCAAACAGCTTAGAATTCTGGACGCTTTGACCAAGCGTACAAAACGGACTGTTGACATTTGTCAGTGTGTTGACATCAGTCAGTGTGTATCCCGATGACGACAACATGAAACGCCAGGTAGGGTTCAAGGTGTTTTTATGTTGGATGGGACAAACATGTGCAGGCAGGCAGGGGTGGAGGCTGGAGGGGGACTGAGTTGGTCCTATCCCATAGACAAACATACATTCACCAAtcatgttacagtgccttgcgaaagtattcggcccccttgaacttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2636330 lncRNA upstream 4811 19784584 ~ 19788459 (+) False G2304575
TU2636332 lncRNA upstream 4811 19784584 ~ 19788459 (+) False G2304575
TU2636333 lncRNA upstream 4811 19784584 ~ 19788459 (+) False G2304575
TU2636334 lncRNA upstream 4811 19784584 ~ 19788459 (+) False G2304575
TU2636335 lncRNA upstream 4811 19784584 ~ 19788459 (+) False G2304575
TU2636428 lncRNA downstream 222 19793913 ~ 19795053 (+) False G2304659
TU2636427 lncRNA downstream 458 19794149 ~ 19795081 (+) True G2304659
TU2636477 lncRNA downstream 89494 19883185 ~ 19924959 (+) True G2304703
TU2636592 lncRNA downstream 266976 20060667 ~ 20061476 (+) True G2304816
TU2637832 lncRNA downstream 746418 20540109 ~ 20540334 (+) True G2305932
XM_036971802.1 mRNA upstream 8831 19669842 ~ 19784439 (+) False ptk2aa
XR_005041341.1 mRNA downstream 200451 19994142 ~ 20001374 (+) True LOC118946489
XR_005041417.1 mRNA downstream 921378 20715069 ~ 20719092 (+) False LOC118946542
XM_021560045.2 mRNA downstream 1409401 21203092 ~ 21205078 (+) False ccdc127b
XM_036971420.1 mRNA downstream 1429230 21222921 ~ 21229758 (+) False LOC110488068
XM_021560050.2 mRNA downstream 1429230 21222921 ~ 21231008 (+) False LOC110488068
TU2636184 other upstream 433481 19354211 ~ 19359789 (+) True dgat1a
TU2635622 other upstream 777677 19001342 ~ 19015593 (+) False LOC110488049
TU2635466 other upstream 1010243 18777345 ~ 18783027 (+) True G2303854
TU2633200 other upstream 2600153 17186565 ~ 17193117 (+) True G2301841
TU2632933 other upstream 2958885 16827065 ~ 16834385 (+) True LOC110488022
TU2636452 other downstream 34526 19828217 ~ 19829961 (+) True G2304678
TU2637856 other downstream 759642 20553333 ~ 20553684 (+) True G2305956
TU2638086 other downstream 1019498 20813189 ~ 20814189 (+) False G2306173
TU2638087 other downstream 1019498 20813189 ~ 20814298 (+) True G2306173
TU2638628 other downstream 1513741 21307432 ~ 21311878 (+) False LOC110488072

Expression Profile