RNA id: TU2636452


Basic Information

Item Value
RNA id TU2636452
length 1262
RNA type TUCP
GC content 0.40
exon number 2
gene id G2304678
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 19828217 ~ 19829961 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtgtgtgtgtgtgtgtgtgtgtccaacactggagggggtgggggagtgAATCTTGTGGCCGATGAAAGATTGTTAGAGGTAATGGTGACttattttgtgtttgttttctgAAATTCCAATATCAAAAAGACTATGAACATTAACTTTATATTACATTACACAGTATGAGTAATACTACAAATAGTGTACTATATCAATGTCACTTGTGTGACACTGGGTGTTGCCATTTCTTCACACATGATATTGAATCAGAAAATCAAACACTTGGCAGAATATAGGCTAATTACAAAAATAGTTAAATGTAGTTATGAGTGGAGATGCTTGGAGTGAATGAACTGCAATCTGTCGGCTTAGATTGGGAGCCATCTGTCAGTGCTCTCTAAGTCAGCCTCGTAACAAACTGGTTTAATGGAGTTCGCTTTGACTCGATCTTCCCATGGCTGGACAGACAGACGtgcagtgaagagagagagaaatagagagagagtgcagCCACCTCCACCCACACATTTCTTATTCAATTTTATGCTGGAAATTATAGTCGTATTCATAACATTTCCTCATGCTATGCATTCATATCTACATTGCAGTATGCTATACTTCCTTAAAGTATATAAACCATATTTTCACACCAtttcctcatactactaacactgCTCTCCAGTGCTCTAAATTACTCCAACTACTACTACTCCAACTGCAACTGCTACTACTCCAACTGCAACTGCTACTACTCCAACTGCAACTGCTACTACGACTACAATTgaagctgctactactactactactattgccaCTTCTACTACTCCAACTGCAACTTCTACTACCgcagctgctactactgctactgctagaACTGCTACTACttttgctgctactactactgctactactactgctactactactactactgctactttctactgttactactactataactactgctactacaactactaccgctgctactactactacaactactactgctactactgctgctactaatactgctactactactgcaactgcaactgctactactgctattaccactgctgctactactgctgctactgctcctgctacttcaactactgctactactcttgctactgctactgctactactacttctgctgctactactactgctactacaacttctgctgctactgctatgactgctattattactactactactattgtcgcagttactactactacttctgctgctactactactgcaact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2636427 lncRNA upstream 33136 19794149 ~ 19795081 (+) True G2304659
TU2636428 lncRNA upstream 33164 19793913 ~ 19795053 (+) False G2304659
TU2636426 lncRNA upstream 34526 19793270 ~ 19793691 (+) True G2304658
TU2636330 lncRNA upstream 39758 19784584 ~ 19788459 (+) False G2304575
TU2636332 lncRNA upstream 39758 19784584 ~ 19788459 (+) False G2304575
TU2636477 lncRNA downstream 53224 19883185 ~ 19924959 (+) True G2304703
TU2636592 lncRNA downstream 230706 20060667 ~ 20061476 (+) True G2304816
TU2637832 lncRNA downstream 710148 20540109 ~ 20540334 (+) True G2305932
TU2637834 lncRNA downstream 711461 20541422 ~ 20541721 (+) True G2305934
TU2637835 lncRNA downstream 711821 20541782 ~ 20541987 (+) True G2305935
XM_036971804.1 mRNA upstream 43778 19607978 ~ 19784439 (+) False ptk2aa
XM_036971795.1 mRNA upstream 43778 19646254 ~ 19784439 (+) False ptk2aa
XM_036971787.1 mRNA upstream 43778 19669839 ~ 19784439 (+) False ptk2aa
XM_036971785.1 mRNA upstream 43778 19669840 ~ 19784439 (+) False ptk2aa
XM_036971791.1 mRNA upstream 43778 19669840 ~ 19784439 (+) False ptk2aa
XR_005041341.1 mRNA downstream 164181 19994142 ~ 20001374 (+) True LOC118946489
XR_005041417.1 mRNA downstream 885108 20715069 ~ 20719092 (+) False LOC118946542
XM_021560045.2 mRNA downstream 1373131 21203092 ~ 21205078 (+) False ccdc127b
XM_036971420.1 mRNA downstream 1392960 21222921 ~ 21229758 (+) False LOC110488068
XM_021560050.2 mRNA downstream 1392960 21222921 ~ 21231008 (+) False LOC110488068
TU2636184 other upstream 468428 19354211 ~ 19359789 (+) True dgat1a
TU2635622 other upstream 812624 19001342 ~ 19015593 (+) False LOC110488049
TU2635466 other upstream 1045190 18777345 ~ 18783027 (+) True G2303854
TU2633200 other upstream 2635100 17186565 ~ 17193117 (+) True G2301841
TU2632933 other upstream 2993832 16827065 ~ 16834385 (+) True LOC110488022
TU2637856 other downstream 723372 20553333 ~ 20553684 (+) True G2305956
TU2638086 other downstream 983228 20813189 ~ 20814189 (+) False G2306173
TU2638087 other downstream 983228 20813189 ~ 20814298 (+) True G2306173
TU2638628 other downstream 1477471 21307432 ~ 21311878 (+) False LOC110488072
TU2638627 other downstream 1477597 21307558 ~ 21311807 (+) True LOC110488072

Expression Profile