RNA id: TU2639866


Basic Information

Item Value
RNA id TU2639866
length 3608
lncRNA type antisense_over
GC content 0.44
exon number 3
gene id G2307792
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 22226286 ~ 22230151 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTGAGTCAATATACACAATAAATCAAATAATGAAAAAAGGACCAAATTAATCTTAATTTGAGAGTGATGAGCAAATGCATAAAGCCCAATACATaggcagtgtcccaaatggcacccaatgcCCTttattgtgcactatataggaaatagcgtgccatttggaatgcactcATAGTGCCCTGTTACCTAGATACAGTGTTAGATCTACATCTTGTCCATAGTTTCACATTCTGTCTAATAGATATTCAATACTGTCTTTATATTATACACATATGATTGGCCTTCTGTGAAGGATTGCATTATAACACAGTGATTAAGAGGCAAAGATTCAGAAAGCAAGAGacctactgtatacagtgccttccttatatacagtgccttcagaaagcaagagacctactgtatacagtgccttcagaaagcaagatacctactgtatacagtgccttcagaaagcaagagacctactgtatacagtgccttcagaaagcaagagacctactgtatacagtgccttcagaaagcaagagacctactgtatacagtgccttcagaaagcaagagacctactgtatacagtgccttcctgatatacagtgccttcctgatgtacagtgccttcctgatatacagtgccttcctgatgtacagtgccttcagaaagtattcacaccccttgactaattccacatattgttgtattacagcctgaattcaaaatggattaaatatattatttttctcactcatctacacacaataacccataattacaaagtgaaaacatgtttttagaatttgttgctaatttaaaatgaaatacagaattatCTGATTTACATAAAatattgactcaagggtgtgaatacttgtagaagcaccattggcagagattacagctttgagtagtcttgggtatgtctgcatcagctttgagtagtcttgggtatgtctgcatcagctttgagtagtcttgggtatgtctgcatcagctttgagtagtcttgggtatgtctgcatcagctttgcagatctggatttggggattttctcccattcttccttgatGATTTTTTGCTAGGCCAACATCTCTGCTGTCTCACGCTAGGGCAACTGAGAAGGACAGGACTGGACGGTCTGGGCCGGGATGGGACTAGACAGGATAAGACAGAACTGGACAGGATAAGACAGAACGGGACAGGATAAGACAGAACGGGACAGGACTGGTCCCAATACTCACAGAAACATTCTTACTGGACCCTTGTTTCCAGGGTTTGGAACATCTATCTGAAATGTATTATGTAAATTATAATAGCATGATTTCATACGCACACACAGCTCACAATGCCCACTTTAAGGTGAGGAGACTGTGGGCTGCTGCACTGCCCACCAATCCTACATCTCAAGTCATTATTTTAATCAAGATAAATACAATACATGTTTGGGGGGTGGTTTAAATGGTTTCCTGTGTTCTGAGAATGAATTCCCTCTTACACCTATTGGTCTGACCTGTGTTAAaagtactatttgaaatctttcaaatgctTTGGGTGTTTGCTCTAGCCAGATGGGTAGGGTTTGCAGTTTTGAGACAGTTCTATTGGTCTATTAAGCAAGGCAAGCCCAATCAAGCACATATAgtatatttgaaatgatttcaaatagtatttaaacACAGCATCATGCTGACTGTGCAGTGAGAAGCGTACAACTGACTTGGAGAACACTGATTGACATTAATAAAATACAGTCTGGCTGTGATGAGGTTCTGTTCCAATACCCACATACAGTATTAGTGTAACGgctgtgaaacggctagcttagttagcggtgcgcgctaaatagcgtttcaatcggtgacgtcacttgctctgagaccttgaagtagtggttccccttgctctgcaagggccgcggcttttgtggagcgatgggtaacgatgcttcgagggtgactgttgttgatgtttgcagagggtccctggttcgcgcctgggtatgggcgaggggacggtctaaagttatactgttacactagcacACTACTAAGAGTGTAACAAGGTCTTGGACATATGTTCTAAGTGCAATATTAGTGTGGACATTGGAACATAGCCTGAAAGACTCCGGTTTTAACTCTTGGCAGTTTCAAGTGACAGTGCAGGGAGCAGGTTTTCCGGGGACCTATGTGAgacttctcctcctcttccctctgtcccGTTATCAACACTCTGAACTTTCCGCCTGATTCCAGGGAATGGTAAGGGTTTAAGAACATTTATTCTTATGGGATCAGATGGAGCCGAACGGAGTAGGAATGAAAAGGTTGGTGAGGATTTCAGGAGCGGAGCCGCCTAGCTGTCACCTTTCCCAATAGCATGGCAAGGGCACGCTCAGCCATGCCTCTCAGTCCTGTCCAACGCAATGCTAATCCAATCAGTAGGCTGGGATTTTTCACGCAGAAAAGAGGAGTAGGagtagaaagaaagaggagaaggacaagaggagaagaaagaaaggaggaagaggaggttgaGAAGGAGCGTTCAGCTTCATCCAGCTCAGAAGAGAACTGTCGGCTGTCTGTTCAGAAGTGCAAATAGTTCTACAACAGTAATACAATGTCATCAGCTCTGACAGGGAAGTCCCGAACTCAAACATTCATCTGCCCTTTCAAACAAACGTCTTGGCCGTTTGTTTGAAAGGAGTTTTCTTTTTGGAGTTTTCTTTTTCTCCTCCTAGGGCCCTGTATAAAGTCTCGGTGAGTTAGTTGGATGGTTGGTCCAGTAAGTATAGCAGAGGAAGAGTAGGATGCCTCCCAGGCAACATCAGCTCCCCAGGTAGCATGAAGCGTCAGGTGATCAGCTTATAAAGACTGTACTGCACATATTGATTTGAGATATTGTCGATTGTTGTGATCGATTCGATCCATGTCTATCCCTGATGATCATTAAGGAAGTGAGGGGAGCCCAGccccctgtccgtctgtctatctGAGGTGGATGAAGGAGAAGGAAACGGGCTTGGTTGGATCCATAGATATCCATAGAACACTATAGTTCACCACATATGTTTGTCTGTCCGTCCTTGTGTTTGGCAAGGTTTGAataccccacccctctctctaaaaTGTGGACTTGCTTACTCCCACTCATTTTTAAAAGCTTTGGATTGATGTAACTAAGCATATGCCATCAGCTTCCTTCATTCATTCCCTTTAAATCCATGACAAACGAGAGAACGAGGGGTAGAGAATTTAACTGCAGACAGAGGGTGGTGTAGTGAGACCAGGAGGCAGAGATCATGgttcaggggtcagaggtcagaggtcaggggtgaAGGGTCACAAGGCCACAGCAGTGCAGGGGTGTTTGAGTTTGCAGGGCAGCACCCCTCTGTTGAGCTGGTAGAACTCCACAAGGTGGATCAGGTCTGTGAACTTGGTGGAGCCGTCGTCCAGACTGAAGGACATCTGACCTTCCTCCTCAcactgtgagagagaggagacaagttAGCTATTATACACATACAATACAgttgagaaggaggggaggagatagGATTTGAGGACAACTTGAGACCGAGCCAAAATGGATGAACAAGAAAGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2639832 lncRNA upstream 50880 22174993 ~ 22175406 (+) True G2307767
TU2639060 lncRNA upstream 175817 22049096 ~ 22050469 (+) True LOC118946490
TU2638892 lncRNA upstream 524134 21701705 ~ 21702152 (+) True G2306912
TU2638872 lncRNA upstream 551005 21674986 ~ 21675281 (+) True G2306892
TU2638870 lncRNA upstream 554897 21671151 ~ 21671389 (+) True G2306890
TU2639852 lncRNA downstream 26985 22257136 ~ 22259964 (+) True G2307779
TU2639889 lncRNA downstream 39963 22270114 ~ 22272124 (+) True G2307812
TU2639908 lncRNA downstream 58820 22288971 ~ 22296379 (+) True G2307829
TU2639962 lncRNA downstream 139028 22369179 ~ 22428002 (+) True G2307876
TU2639966 lncRNA downstream 145545 22375696 ~ 22376547 (+) True G2307880
XM_036971813.1 mRNA upstream 4184 22191696 ~ 22222102 (+) False LOC110488101
XM_036971812.1 mRNA upstream 4184 22214554 ~ 22222102 (+) False LOC110488102
XM_021560120.2 mRNA upstream 4184 22214902 ~ 22222102 (+) False LOC110488102
XM_021560121.2 mRNA upstream 4184 22214902 ~ 22222102 (+) False LOC110488102
XM_036971811.1 mRNA upstream 4184 22214902 ~ 22222102 (+) False LOC110488102
XM_021560125.2 mRNA downstream 175820 22405971 ~ 22416346 (+) False c32h5orf49
XR_005041361.1 mRNA downstream 322335 22552486 ~ 22565890 (+) False LOC118936411
XR_005041362.1 mRNA downstream 322335 22552486 ~ 22565890 (+) False LOC118936411
XR_005041363.1 mRNA downstream 322335 22552486 ~ 22565890 (+) False LOC118936411
XR_005041364.1 mRNA downstream 322335 22552486 ~ 22565890 (+) False LOC118936411
TU2638805 other upstream 638852 21587088 ~ 21587434 (+) True G2306825
TU2638636 other upstream 902390 21320623 ~ 21323896 (+) True G2306688
TU2638628 other upstream 914408 21307432 ~ 21311878 (+) False LOC110488072
TU2638627 other upstream 914479 21307558 ~ 21311807 (+) True LOC110488072
TU2638087 other upstream 1411988 20813189 ~ 20814298 (+) True G2306173
TU2639980 other downstream 175866 22406017 ~ 22416292 (+) True c32h5orf49
TU2640356 other downstream 374169 22604320 ~ 22604721 (+) True G2308224
TU2641501 other downstream 1749199 23979350 ~ 23980779 (+) False LOC110488133
TU2641502 other downstream 1749317 23979468 ~ 23980779 (+) False LOC110488133
TU2641493 other downstream 1749406 23979557 ~ 23980779 (+) False LOC110488133

Expression Profile