RNA id: TU2639908


Basic Information

Item Value
RNA id TU2639908
length 1818
lncRNA type antisense_over
GC content 0.42
exon number 5
gene id G2307829
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 22288971 ~ 22296379 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtgtgtgtaggtgtgtacttATGCATTTGTGTACCTGTACCTGCGGTGTCCCTTGTGGTGCTTGGCGGTGGCAGACTTAGGGATGTGTATGGGTTCCTTCAGAGCTCCTCTCAGGTGGATGGTTCGCTCCTGGATCACCTCCCTGACGTGTTTGATCCAATCCTGCTTGTTCTCAATGCTCGACGCCTGCCATTGGCCCAGGGAAGGGGTCAAAGGTCGTAAATTAATTCACCCAATCACCTCGCTCTCAGAACTCACATTTTAGTCTAAACAGTTTCATACACCCAAACGGTTATATTCCAATACCCACACGACTTCATTCTAAGTAGTAAGCTAGTGTGGACATTGAAACAGAGAAtaaggagagtaggagaggaaaggagacaaagagaggaggCCACAGTAGAGTATTGAGATGCAGCCGAGGGCTATATTATGTGATAGGCTAGTTAGTACAGTTTTACTCACCATTGATCCATGTTTGCATCCCTGACTTGGCTTTGGTTCAAATATAGAATAGAGCATTTCACTGGTTTGTGTTTAGTTCATTTATATTACATTTTCAATGATGACAGAATGGCTCGAGATGACTGACGGACCACAGTTAGAGCATTTTGGTGGTGGCTAGTTAGTTAATTAGGTGGTAAACAGTTATATTGATGGACAGAATAGGAACAGAGTCATTATATTATGTCAGAGACAACTGGTTAGGAGTAGGGCAACATGATTTTCCAACCACTGACACAAACAAGAGGCGTCAGTACTAAAACTATCTTTGGAGGTGGGCATTAAAAACATATAAGATGTTCAATTCggtaaggagacagagagagagacggaagataaagccccttgaattgaactgATAGAGGGTCAACACGTGAGGTGTCAAATCCTAAAACAAGAAGAGATCCATTTTTCTAGAAGAGAAAACTGTACATGCCTCTCATCCATACAGAGGATGTAAAAAGTAGCTAGAGGGTGTGGGAGTTGGAGGAATTGTGGGAGTTTAGGGGTTAAAGTTCATGTCAGTGGTGTTGGCGTAAGCATGTTAGCCCACGGTTGGTTGGCAAACAAACATTGAATATTCAGAGATACAAACATAAACAAAACAGCCCCAGCCACAGATGTACGGTACTAGACTGTGTGATAGAACAGTCattagagagataaagacagcaaggtaacagatgtactgtactagactgtgtgatagaacagtcattagagagataaagacagcaagGTAACAGATGTACGGTACTAGACTGTGTGATAGAACAGTCattagagagataaagacagcaaggtaacagatgtacggtactagactgtatgatagaacagtcattagagagataaagacagcaagGTAACAGATGTACGGTACTAGACTGTGTGATAGAACAGTCattagagagataaagacagcaagGTAACAGATGTACGGTACTAGACTGTGTGATAGAACAGTCATTAGAGAGATAAAGGCAGCAAGGTAACAGATGTACGGTACTAGACTGTATGATAGAACAGTCatcagagacaacacagagagataaagacagcaaggtaacagatgtactgtactagactgtatgatagaacagtcatcagagacaacacagagagataaagacagcaagGTAACATATGTACTAGACTAGACTCTATGATAGAACAGTCattagagacaacacagagagataaagacagcaaggtaacagatgtactgtactagactgtatgatagaacagtcatcagagacaacacagagagataaagagaccaAGgtaacagatgtactagactagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2639889 lncRNA upstream 16847 22270114 ~ 22272124 (+) True G2307812
TU2639852 lncRNA upstream 29007 22257136 ~ 22259964 (+) True G2307779
TU2639866 lncRNA upstream 58820 22226286 ~ 22230151 (+) True G2307792
TU2639832 lncRNA upstream 113565 22174993 ~ 22175406 (+) True G2307767
TU2639060 lncRNA upstream 238502 22049096 ~ 22050469 (+) True LOC118946490
TU2639962 lncRNA downstream 72800 22369179 ~ 22428002 (+) True G2307876
TU2639966 lncRNA downstream 79317 22375696 ~ 22376547 (+) True G2307880
TU2639995 lncRNA downstream 114107 22410486 ~ 22410998 (+) True G2307904
TU2640296 lncRNA downstream 232213 22528592 ~ 22528802 (+) True G2308165
TU2640301 lncRNA downstream 235754 22532133 ~ 22532363 (+) True G2308170
XM_036971812.1 mRNA upstream 66869 22214554 ~ 22222102 (+) False LOC110488102
XM_021560125.2 mRNA downstream 109592 22405971 ~ 22416346 (+) False c32h5orf49
XR_005041361.1 mRNA downstream 256107 22552486 ~ 22565890 (+) False LOC118936411
XR_005041362.1 mRNA downstream 256107 22552486 ~ 22565890 (+) False LOC118936411
XR_005041363.1 mRNA downstream 256107 22552486 ~ 22565890 (+) False LOC118936411
XR_005041364.1 mRNA downstream 256107 22552486 ~ 22565890 (+) False LOC118936411
TU2638805 other upstream 701537 21587088 ~ 21587434 (+) True G2306825
TU2638636 other upstream 965075 21320623 ~ 21323896 (+) True G2306688
TU2638628 other upstream 977093 21307432 ~ 21311878 (+) False LOC110488072
TU2638627 other upstream 977164 21307558 ~ 21311807 (+) True LOC110488072
TU2638087 other upstream 1474673 20813189 ~ 20814298 (+) True G2306173
TU2639980 other downstream 109638 22406017 ~ 22416292 (+) True c32h5orf49
TU2640356 other downstream 307941 22604320 ~ 22604721 (+) True G2308224
TU2641501 other downstream 1682971 23979350 ~ 23980779 (+) False LOC110488133
TU2641502 other downstream 1683089 23979468 ~ 23980779 (+) False LOC110488133
TU2641493 other downstream 1683178 23979557 ~ 23980779 (+) False LOC110488133

Expression Profile