RNA id: TU2639995


Basic Information

Item Value
RNA id TU2639995
length 405
lncRNA type intronic
GC content 0.62
exon number 2
gene id G2307904
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 22410486 ~ 22410998 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcctctgattgagaaccatatcaggccaaacacagaaacagacaaactagacacacaacatagaatgcccactcagatcacaccctgaccaaacaaaacatacaaagcaaactatggtcagggtgtgacagtaccctgGGAGGGAGGgcggcggctccttgcagactggcggcaccggcggctccttgcagactggcggcactggcggctccttgcagactggcgtctccttgcagactggcggcacgggcggctccttgcagactggcggcactggtggctccttgcagactggcggcactggcggctccttgcagactggcggctccttgcagactggcggcactggcggctccttgcagaccggcggcactggcggctccttgcagactggtggctccttgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2639966 lncRNA upstream 33939 22375696 ~ 22376547 (+) True G2307880
TU2639908 lncRNA upstream 114107 22288971 ~ 22296379 (+) True G2307829
TU2639889 lncRNA upstream 138362 22270114 ~ 22272124 (+) True G2307812
TU2639852 lncRNA upstream 150522 22257136 ~ 22259964 (+) True G2307779
TU2639866 lncRNA upstream 180335 22226286 ~ 22230151 (+) True G2307792
TU2640296 lncRNA downstream 117594 22528592 ~ 22528802 (+) True G2308165
TU2640301 lncRNA downstream 121135 22532133 ~ 22532363 (+) True G2308170
TU2640302 lncRNA downstream 121388 22532386 ~ 22532622 (+) True G2308171
TU2640334 lncRNA downstream 141841 22552839 ~ 22553907 (+) True LOC118936411
TU2640335 lncRNA downstream 145693 22556691 ~ 22558285 (+) True G2308203
XM_036971812.1 mRNA upstream 188384 22214554 ~ 22222102 (+) False LOC110488102
XR_005041361.1 mRNA downstream 141488 22552486 ~ 22565890 (+) False LOC118936411
XR_005041362.1 mRNA downstream 141488 22552486 ~ 22565890 (+) False LOC118936411
XR_005041363.1 mRNA downstream 141488 22552486 ~ 22565890 (+) False LOC118936411
XR_005041364.1 mRNA downstream 141488 22552486 ~ 22565890 (+) False LOC118936411
XR_005041397.1 mRNA downstream 155703 22566701 ~ 22572442 (+) False LOC118946522
TU2638805 other upstream 823052 21587088 ~ 21587434 (+) True G2306825
TU2638636 other upstream 1086590 21320623 ~ 21323896 (+) True G2306688
TU2638628 other upstream 1098608 21307432 ~ 21311878 (+) False LOC110488072
TU2638627 other upstream 1098679 21307558 ~ 21311807 (+) True LOC110488072
TU2638087 other upstream 1596188 20813189 ~ 20814298 (+) True G2306173
TU2640356 other downstream 193322 22604320 ~ 22604721 (+) True G2308224
TU2641501 other downstream 1568352 23979350 ~ 23980779 (+) False LOC110488133
TU2641502 other downstream 1568470 23979468 ~ 23980779 (+) False LOC110488133
TU2641493 other downstream 1568559 23979557 ~ 23980779 (+) False LOC110488133
TU2641635 other downstream 1740689 24151687 ~ 24157436 (+) True LOC110488142

Expression Profile