RNA id: TU2640296


Basic Information

Item Value
RNA id TU2640296
length 211
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G2308165
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 22528592 ~ 22528802 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caacggctcagccacaaagtaataggtcacacaagctcacagaacgggaccgcagagtgctgaagcacatagcgaataaaaatcatctgtcctcagttgcaacactctcTACCGAGttgcaaactgcctctggaagcaacgtcagcacaataactgttcatcgggagcttcatagaatgggtttccatggccgagcagtcgcacacaggac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2639962 lncRNA upstream 100590 22369179 ~ 22428002 (+) True G2307876
TU2639995 lncRNA upstream 117594 22410486 ~ 22410998 (+) True G2307904
TU2639966 lncRNA upstream 152045 22375696 ~ 22376547 (+) True G2307880
TU2639908 lncRNA upstream 232213 22288971 ~ 22296379 (+) True G2307829
TU2639889 lncRNA upstream 256468 22270114 ~ 22272124 (+) True G2307812
TU2640301 lncRNA downstream 3331 22532133 ~ 22532363 (+) True G2308170
TU2640302 lncRNA downstream 3584 22532386 ~ 22532622 (+) True G2308171
TU2640334 lncRNA downstream 24037 22552839 ~ 22553907 (+) True LOC118936411
TU2640335 lncRNA downstream 27889 22556691 ~ 22558285 (+) True G2308203
TU2640338 lncRNA downstream 30864 22559666 ~ 22566449 (+) True G2308206
XM_021560125.2 mRNA upstream 112246 22405971 ~ 22416346 (+) False c32h5orf49
XM_036971812.1 mRNA upstream 306490 22214554 ~ 22222102 (+) False LOC110488102
XR_005041361.1 mRNA downstream 23684 22552486 ~ 22565890 (+) False LOC118936411
XR_005041362.1 mRNA downstream 23684 22552486 ~ 22565890 (+) False LOC118936411
XR_005041363.1 mRNA downstream 23684 22552486 ~ 22565890 (+) False LOC118936411
XR_005041364.1 mRNA downstream 23684 22552486 ~ 22565890 (+) False LOC118936411
XR_005041397.1 mRNA downstream 37899 22566701 ~ 22572442 (+) False LOC118946522
TU2639980 other upstream 112300 22406017 ~ 22416292 (+) True c32h5orf49
TU2638805 other upstream 941158 21587088 ~ 21587434 (+) True G2306825
TU2638636 other upstream 1204696 21320623 ~ 21323896 (+) True G2306688
TU2638628 other upstream 1216714 21307432 ~ 21311878 (+) False LOC110488072
TU2638627 other upstream 1216785 21307558 ~ 21311807 (+) True LOC110488072
TU2640356 other downstream 75518 22604320 ~ 22604721 (+) True G2308224
TU2641501 other downstream 1450548 23979350 ~ 23980779 (+) False LOC110488133
TU2641502 other downstream 1450666 23979468 ~ 23980779 (+) False LOC110488133
TU2641493 other downstream 1450755 23979557 ~ 23980779 (+) False LOC110488133
TU2641635 other downstream 1622885 24151687 ~ 24157436 (+) True LOC110488142

Expression Profile