RNA id: TU2640339



Basic Information


Item Value
RNA id TU2640339
length 289
lncRNA type read_through
GC content 0.42
exon number 2
gene id G2308207
representative True

Chromosome Information


Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 22562994 ~ 22569829 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


acaaaatttgagcgaaataagctttttgcgtgtggaaaatgtctggggtcttttatttcaactcatgaaacatgggaccaacactttacatgttgcgtttatatttttgttcagtgtacaggTTTTGATTTGATAACTTCATCTATTCCATAATGTGTGTGTTGCTGGTCCTTCTATGACCTGTCTCCAGACTTCCCTAAAACCCTTCTCATCCCAAATCCCCCTAGTACACTCAGCATCTGAGcaggtggatgtgtgtgtgcctCCAAGCAGTCAGATAACCACTCCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2640335 lncRNA upstream 4709 22556691 ~ 22558285 (+) True G2308203
TU2640334 lncRNA upstream 9087 22552839 ~ 22553907 (+) True LOC118936411
TU2640302 lncRNA upstream 30372 22532386 ~ 22532622 (+) True G2308171
TU2640301 lncRNA upstream 30631 22532133 ~ 22532363 (+) True G2308170
TU2640296 lncRNA upstream 34192 22528592 ~ 22528802 (+) True G2308165
TU2640341 lncRNA downstream 4150 22573979 ~ 22574233 (+) False LOC110488106
TU2640342 lncRNA downstream 8294 22578123 ~ 22578352 (+) False LOC110488106
TU2640336 lncRNA downstream 8796 22578625 ~ 22579951 (+) True LOC110488106
TU2640343 lncRNA downstream 11040 22580869 ~ 22581116 (+) True G2308211
TU2640347 lncRNA downstream 15892 22585721 ~ 22585924 (+) True G2308215
XM_021560125.2 mRNA upstream 146648 22405971 ~ 22416346 (+) False c32h5orf49
XM_021560120.2 mRNA upstream 340892 22214902 ~ 22222102 (+) False LOC110488102
XR_005041376.1 mRNA downstream 3420 22573249 ~ 22579988 (+) False LOC110488106
XR_005041377.1 mRNA downstream 3420 22573249 ~ 22579988 (+) False LOC110488106
XM_021560127.2 mRNA downstream 8511 22578340 ~ 22579988 (+) False LOC110488106
XM_021560129.2 mRNA downstream 60353 22630182 ~ 22646620 (+) False LOC110488108
XR_002468347.2 mRNA downstream 60353 22630182 ~ 22646620 (+) True LOC110488108
TU2639980 other upstream 146702 22406017 ~ 22416292 (+) True c32h5orf49
TU2638805 other upstream 975560 21587088 ~ 21587434 (+) True G2306825
TU2638636 other upstream 1239098 21320623 ~ 21323896 (+) True G2306688
TU2638628 other upstream 1251116 21307432 ~ 21311878 (+) False LOC110488072
TU2640356 other downstream 34491 22604320 ~ 22604721 (+) True G2308224
TU2641501 other downstream 1409521 23979350 ~ 23980779 (+) False LOC110488133
TU2641502 other downstream 1409639 23979468 ~ 23980779 (+) False LOC110488133
TU2641493 other downstream 1409728 23979557 ~ 23980779 (+) False LOC110488133
TU2641635 other downstream 1581858 24151687 ~ 24157436 (+) True LOC110488142

Expression Profile