RNA id: TU2640736


Basic Information

Item Value
RNA id TU2640736
length 384
lncRNA type antisense_over
GC content 0.52
exon number 3
gene id G2308565
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 23048546 ~ 23051189 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGACTTCATACGAGCGTGTTTCCTGTGAATACTTTACCTTTTTGATTTCCTCCTCGAAGGCATTCTGCAGGTACTTGTACCTCCTGATAAGCTTGTTAAaaaccTGAGCATAGTGGCGGAGGTTGGCATGGTTCTCCTTGGTGGTAAACACACAGTGTTCTGTCACCTTGGTCTTGTCCCCCTCGTCAATGCGTGTCCCACCGGGAGCGAGCATGCTCCCCGCGATGAGGATGTCGAAGAGAGTGTCGGCATAGCGACGGTAGTCGAGTCGGGACCCGGTAACGTCCAGGAACTTGGCTACAGCATCGAGGTCCCCTCCTGCTTCGTTGAGGCCCAGAATAATTGTGTCTCTAAAAACTGTGGGCTCAAACTTCTCCTTTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2640735 lncRNA upstream 1072 23046225 ~ 23047474 (+) True G2308564
TU2640733 lncRNA upstream 3180 23044595 ~ 23045366 (+) False G2308563
TU2640734 lncRNA upstream 3180 23044595 ~ 23045366 (+) True G2308563
TU2640718 lncRNA upstream 18957 23029046 ~ 23029589 (+) True G2308550
TU2640632 lncRNA upstream 61923 22985142 ~ 22986623 (+) True LOC110488118
TU2640639 lncRNA downstream 11901 23063090 ~ 23069768 (+) True LOC110489407
TU2640740 lncRNA downstream 15064 23066253 ~ 23066662 (+) True G2308568
TU2640742 lncRNA downstream 21428 23072617 ~ 23073062 (+) False LOC110488124
TU2640741 lncRNA downstream 22739 23073928 ~ 23074973 (+) True LOC110488124
TU2640746 lncRNA downstream 31750 23082939 ~ 23083251 (+) True G2308574
XM_021560150.2 mRNA upstream 31530 23012552 ~ 23017016 (+) False LOC110488122
XM_021560151.2 mRNA upstream 31530 23012568 ~ 23017016 (+) True LOC110488122
XM_036970701.1 mRNA upstream 42648 22991479 ~ 23005898 (+) False LOC110488120
XR_005041391.1 mRNA downstream 10908 23062097 ~ 23069745 (+) False LOC110489407
XM_036971658.1 mRNA downstream 11011 23062200 ~ 23069745 (+) False LOC110489407
XM_036971659.1 mRNA downstream 11024 23062213 ~ 23069079 (+) False LOC110489407
XR_005041392.1 mRNA downstream 11812 23063001 ~ 23069745 (+) False LOC110489407
XM_021560154.2 mRNA downstream 21328 23072517 ~ 23076040 (+) False LOC110488124
TU2640356 other upstream 443825 22604320 ~ 22604721 (+) True G2308224
TU2639980 other upstream 632254 22406017 ~ 22416292 (+) True c32h5orf49
TU2638805 other upstream 1461112 21587088 ~ 21587434 (+) True G2306825
TU2638636 other upstream 1724650 21320623 ~ 21323896 (+) True G2306688
TU2638627 other upstream 1736739 21307558 ~ 21311807 (+) True LOC110488072
TU2641501 other downstream 928161 23979350 ~ 23980779 (+) False LOC110488133
TU2641502 other downstream 928279 23979468 ~ 23980779 (+) False LOC110488133
TU2641493 other downstream 928368 23979557 ~ 23980779 (+) False LOC110488133
TU2641635 other downstream 1100498 24151687 ~ 24157436 (+) True LOC110488142
TU2644105 other downstream 2684005 25735194 ~ 25736847 (+) True G2311528

Expression Profile