RNA id: TU2641171


Basic Information

Item Value
RNA id TU2641171
length 200
lncRNA type intronic
GC content 0.40
exon number 1
gene id G2308936
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 23337496 ~ 23337695 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTAAGGCTGATAACCTCTTTCTCATGCAagctaatttgatttgattcaggaCAGGAGTACTTTCACCTAGTTCTGCTTCCAGAACCTTCTTTTTTAAATGCTTGGAATCAAATTTACCTGATAGAATACAGTGTGTACAAACCTACAAAAGGGCTTCCCCAGTGATCAATCTTTGGGCCTCTATCCTTTAGCTTAGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2641106 lncRNA upstream 101039 23235947 ~ 23236457 (+) True G2308882
TU2641096 lncRNA upstream 112666 23222533 ~ 23224830 (+) True G2308873
TU2641078 lncRNA upstream 122961 23199004 ~ 23214535 (+) True LOC118946519
TU2640764 lncRNA upstream 232594 23104697 ~ 23104902 (+) True G2308592
TU2640746 lncRNA upstream 254245 23082939 ~ 23083251 (+) True G2308574
TU2641229 lncRNA downstream 108456 23446151 ~ 23450031 (+) False G2308991
TU2641231 lncRNA downstream 108456 23446151 ~ 23448350 (+) True G2308991
TU2641113 lncRNA downstream 126140 23463835 ~ 23469823 (+) True LOC110489408
TU2641347 lncRNA downstream 317217 23654912 ~ 23658368 (+) True G2309092
TU2641455 lncRNA downstream 505076 23842771 ~ 23843517 (+) True G2309185
XR_005041390.1 mRNA upstream 122878 23199007 ~ 23214618 (+) False LOC118946519
XM_021560155.2 mRNA upstream 217453 23107982 ~ 23120043 (+) True LOC110488125
XM_021560154.2 mRNA upstream 261456 23072517 ~ 23076040 (+) False LOC110488124
XR_005041392.1 mRNA upstream 267751 23063001 ~ 23069745 (+) False LOC110489407
XM_036971659.1 mRNA upstream 268417 23062213 ~ 23069079 (+) False LOC110489407
XM_021560163.2 mRNA downstream 138079 23475774 ~ 23540812 (+) True LOC110488130
XM_036971654.1 mRNA downstream 420598 23758293 ~ 23883531 (+) False LOC110488131
XM_036971655.1 mRNA downstream 420600 23758295 ~ 23814145 (+) False LOC110488131
XM_036971651.1 mRNA downstream 420600 23758295 ~ 23883531 (+) False LOC110488131
XM_036971653.1 mRNA downstream 420600 23758295 ~ 23883531 (+) False LOC110488131
TU2640356 other upstream 732775 22604320 ~ 22604721 (+) True G2308224
TU2639980 other upstream 921204 22406017 ~ 22416292 (+) True c32h5orf49
TU2638805 other upstream 1750062 21587088 ~ 21587434 (+) True G2306825
TU2638636 other upstream 2013600 21320623 ~ 21323896 (+) True G2306688
TU2638627 other upstream 2025689 21307558 ~ 21311807 (+) True LOC110488072
TU2641501 other downstream 641655 23979350 ~ 23980779 (+) False LOC110488133
TU2641502 other downstream 641773 23979468 ~ 23980779 (+) False LOC110488133
TU2641493 other downstream 641862 23979557 ~ 23980779 (+) False LOC110488133
TU2641635 other downstream 813992 24151687 ~ 24157436 (+) True LOC110488142
TU2644105 other downstream 2397499 25735194 ~ 25736847 (+) True G2311528

Expression Profile