RNA id: TU2641926



Basic Information


Item Value
RNA id TU2641926
length 227
lncRNA type intronic
GC content 0.48
exon number 1
gene id G2309580
representative True

Chromosome Information


Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 24556969 ~ 24557195 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gttggctatggagacatatgtcacggaatctctgagacaggggtacattcggccctccatgtcacctgtctcctcaagtttattttcttgtgaagaaaaaggagggaggactgcgtccgtgcattgattatcgaggtctaaattcgatcacagtgggatttagttatccgctacctctcatcgctacggcggtggaattaTTCCACGGAGCGCGTTTTTTCACgaac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2641902 lncRNA upstream 38671 24517985 ~ 24518298 (+) True G2309556
TU2641893 lncRNA upstream 57470 24499220 ~ 24499499 (+) True G2309547
TU2641892 lncRNA upstream 59000 24497596 ~ 24497969 (+) True G2309546
TU2641890 lncRNA upstream 60919 24495644 ~ 24496050 (+) True G2309544
TU2641880 lncRNA upstream 71010 24479907 ~ 24485959 (+) True G2309540
TU2641937 lncRNA downstream 13751 24570946 ~ 24571177 (+) True G2309591
TU2641949 lncRNA downstream 28796 24585991 ~ 24586302 (+) True G2309603
TU2641959 lncRNA downstream 42147 24599342 ~ 24600122 (+) True G2309612
TU2641963 lncRNA downstream 49543 24606738 ~ 24607057 (+) True G2309615
TU2641965 lncRNA downstream 51152 24608347 ~ 24608557 (+) True G2309617
XM_021560223.2 mRNA upstream 89726 24420174 ~ 24467243 (+) False LOC110488151
XM_021560231.2 mRNA downstream 240123 24797318 ~ 24915300 (+) False LOC110488157
XM_021560232.2 mRNA downstream 240123 24797318 ~ 24915300 (+) False LOC110488157
XM_021560234.2 mRNA downstream 240123 24797318 ~ 24915300 (+) False LOC110488157
XM_021560239.2 mRNA downstream 240123 24797318 ~ 24915300 (+) False LOC110488157
XM_021560242.2 mRNA downstream 240124 24797319 ~ 24915300 (+) False LOC110488157
TU2641635 other upstream 399533 24151687 ~ 24157436 (+) True LOC110488142
TU2641501 other upstream 576190 23979350 ~ 23980779 (+) False LOC110488133
TU2641502 other upstream 576190 23979468 ~ 23980779 (+) False LOC110488133
TU2641493 other upstream 576190 23979557 ~ 23980779 (+) False LOC110488133
TU2640356 other upstream 1952248 22604320 ~ 22604721 (+) True G2308224
TU2644105 other downstream 1177999 25735194 ~ 25736847 (+) True G2311528
TU2644579 other downstream 1361957 25919152 ~ 25919800 (+) True G2311978
TU2644928 other downstream 1767957 26325152 ~ 26325383 (+) True G2312300
TU2645416 other downstream 2176109 26733304 ~ 26733645 (+) True G2312752
TU2645462 other downstream 2259489 26816684 ~ 26820896 (+) False LOC110488193

Expression Profile