RNA id: TU2641979



Basic Information


Item Value
RNA id TU2641979
length 229
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G2309631
representative True

Chromosome Information


Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 24634184 ~ 24634412 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cagctaaaaactgttgttcttattaaagaagcaataaaactggccttctttagacttgttgagtatctggagcatcagcatttgtgggtttgattacaggcccaaaatggccagaaacaaagacctttcttctgaaactcgtcagtctattcttgttctgagaaattaaggctattccatgtgagaaattgccaagaaactgaagatctcatacaacgctgtgtacaga

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2641977 lncRNA upstream 2618 24631361 ~ 24631566 (+) True G2309629
TU2641976 lncRNA upstream 3320 24630381 ~ 24630864 (+) True G2309628
TU2641966 lncRNA upstream 21401 24612546 ~ 24612783 (+) True G2309618
TU2641965 lncRNA upstream 25627 24608347 ~ 24608557 (+) True G2309617
TU2641963 lncRNA upstream 27127 24606738 ~ 24607057 (+) True G2309615
TU2641990 lncRNA downstream 17273 24651685 ~ 24652029 (+) True G2309642
TU2642019 lncRNA downstream 60919 24695331 ~ 24695936 (+) True G2309671
TU2642030 lncRNA downstream 77026 24711438 ~ 24711726 (+) True G2309682
TU2642044 lncRNA downstream 99767 24734179 ~ 24734420 (+) True G2309696
TU2642048 lncRNA downstream 103228 24737640 ~ 24737889 (+) True G2309700
XM_021560223.2 mRNA upstream 166941 24420174 ~ 24467243 (+) False LOC110488151
XM_021560231.2 mRNA downstream 162906 24797318 ~ 24915300 (+) False LOC110488157
XM_021560232.2 mRNA downstream 162906 24797318 ~ 24915300 (+) False LOC110488157
XM_021560234.2 mRNA downstream 162906 24797318 ~ 24915300 (+) False LOC110488157
XM_021560239.2 mRNA downstream 162906 24797318 ~ 24915300 (+) False LOC110488157
XM_021560242.2 mRNA downstream 162907 24797319 ~ 24915300 (+) False LOC110488157
TU2641635 other upstream 476748 24151687 ~ 24157436 (+) True LOC110488142
TU2641501 other upstream 653405 23979350 ~ 23980779 (+) False LOC110488133
TU2641502 other upstream 653405 23979468 ~ 23980779 (+) False LOC110488133
TU2641493 other upstream 653405 23979557 ~ 23980779 (+) False LOC110488133
TU2640356 other upstream 2029463 22604320 ~ 22604721 (+) True G2308224
TU2644105 other downstream 1100782 25735194 ~ 25736847 (+) True G2311528
TU2644579 other downstream 1284740 25919152 ~ 25919800 (+) True G2311978
TU2644928 other downstream 1690740 26325152 ~ 26325383 (+) True G2312300
TU2645416 other downstream 2098892 26733304 ~ 26733645 (+) True G2312752
TU2645462 other downstream 2182272 26816684 ~ 26820896 (+) False LOC110488193

Expression Profile