RNA id: TCONS_00059047


Basic Information

Item Value
RNA id TCONS_00059047
length 857
RNA type mRNA
GC content 0.40
exon number 5
gene id XLOC_030197
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 32076109 ~ 32080192 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TACCTGTTTTCCTAGACGTTTATCCAACGTATATTGATTTCTCCTTAATTAAACTGACGACCAGAATACATTTTGAGTTTGATAAACAATGGGGAAACGGTATTACTGTGACTACTGTGACCGCAGCTTTCAGGACAACCTCCACAACAGAAAGAAGCACCTAAACGGCGTCCAGCATCACCGGGCGAAGAAAGCCTGGTTTGACAACTTCAGAGATGCTGCCACACTTTTAAACGACGAGCGATCGAAAGAAGTCTGTAGAAAGTTTGTCCAGACAGGACATTGTGTGTTTGGTACGAGTTGTCGATTTTCACACATGTCTGAGAAGCAAATGAAGATGCTGGAGCAGAAGATTGATGAACTTTGTGGTGACTTCCTGCCAGATGAAAAGCGTCAGAAGGAAGATCCTGACCAGGATGGATCATCTGAGCGCAGCGTTGATGAATGGCTCTCCAGAAGAGAGAAGAAACTGGCTGCTTTGACATCAGGAAGAGTTTTAAGGATGGAAGAGGAAGAATGCACAGAAAACATTGAGATACCTCCTTATTTGCTATCTATTCCAGATCTTCCTCCATCTCTCCATCCTCCACCTGCTGGTGGTTGGAGAGTGACGGTGCACAACGAATGGGgttgaaattaaatgtaaaatccttttatttaatgatttttttccttttagacCATGCTGCTCACTGTAATCTTTACAAAGGCTTTTTATATATCAAAAACATTGTACATATTTCTATCCAAACAATTGCATgcataatatatttgtgtaataGGAAGCATGTCTGCATGACTgaacaagtttacattttatataaacaCTCTCAATAAATACAGTGCATTTAACTTCA

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005689 U12-type spliceosomal complex cellular_component
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-040808-31 Predicted to enable zinc ion binding activity. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of U12-type spliceosomal complex. Orthologous to human ZMAT5 (zinc finger matrin-type 5).

Ensembl:

ensembl_id ENSDART00000144510

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00059039 lncRNA upstream 81582 31983191 ~ 31994554 (+) True XLOC_030195
TCONS_00061730 lncRNA upstream 158000 31911003 ~ 31918136 (+) True XLOC_030192
TCONS_00061729 lncRNA upstream 164058 31904847 ~ 31912078 (+) True XLOC_030191
TCONS_00059031 lncRNA upstream 207767 31867518 ~ 31868369 (+) True XLOC_030190
TCONS_00059025 lncRNA upstream 259300 31813336 ~ 31816836 (+) True XLOC_030188
TCONS_00061731 lncRNA downstream 3537 32083729 ~ 32086577 (+) True XLOC_030198
TCONS_00061732 lncRNA downstream 179971 32260163 ~ 32263220 (+) False XLOC_030204
TCONS_00059058 lncRNA downstream 179971 32260163 ~ 32264060 (+) True XLOC_030204
TCONS_00061733 lncRNA downstream 278688 32358880 ~ 32367481 (+) True XLOC_030206
TCONS_00059073 lncRNA downstream 770647 32850839 ~ 32856096 (+) False XLOC_030210
TCONS_00059042 mRNA upstream 29839 32009080 ~ 32046297 (+) False XLOC_030196
TCONS_00059044 mRNA upstream 29839 32009542 ~ 32046297 (+) False XLOC_030196
TCONS_00059045 mRNA upstream 29839 32009956 ~ 32046297 (+) True XLOC_030196
TCONS_00059041 mRNA upstream 32520 32007627 ~ 32043616 (+) False XLOC_030196
TCONS_00059048 mRNA downstream 61598 32141790 ~ 32148529 (+) True XLOC_030199
TCONS_00059049 mRNA downstream 82492 32162684 ~ 32182682 (+) False XLOC_030200
TCONS_00059051 mRNA downstream 126186 32206378 ~ 32217579 (+) False XLOC_030201
TCONS_00059052 mRNA downstream 126331 32206523 ~ 32217575 (+) True XLOC_030201
TCONS_00059053 mRNA downstream 141563 32221755 ~ 32233860 (+) False XLOC_030202
TCONS_00059033 other upstream 131414 31944607 ~ 31944722 (+) False XLOC_030193
TCONS_00059030 other upstream 207508 31860071 ~ 31868628 (+) False XLOC_030190
TCONS_00059020 other upstream 527349 31548312 ~ 31548787 (+) True XLOC_030185
TCONS_00059006 other upstream 1249244 30780600 ~ 30826892 (+) True XLOC_030177
TCONS_00059004 other upstream 1327095 30743846 ~ 30749041 (+) True XLOC_030175
TCONS_00059050 other downstream 98438 32178630 ~ 32182728 (+) True XLOC_030200
TCONS_00059060 other downstream 264997 32345189 ~ 32346131 (+) True XLOC_030205
TCONS_00059063 other downstream 557456 32637648 ~ 32637765 (+) True XLOC_030208
TCONS_00059074 other downstream 778236 32858428 ~ 32859254 (+) True XLOC_030210
TCONS_00059077 other downstream 802515 32882707 ~ 32886909 (+) False XLOC_030211

Expression Profile

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