RNA id: TCONS_00061731


Basic Information

Item Value
RNA id TCONS_00061731
length 2796
lncRNA type antisense_over
GC content 0.33
exon number 2
gene id XLOC_030198
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 32083729 ~ 32086577 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATATTTTGAACACAAGGTCAACTCAACAATCATCATTAATTCAGCATTAGAGACTGGGagaaaaacaacacatttcttgtaTTCTTGTATTTATTCTAtgctttttgattgtttattagattttatgcagatATACGCTTCCCCACAAAATTATCCCAATTAATCTCAATTGATAAATTCTGTCCAAATAGACATCATCCAGTTATCAGGTGGAATTGTATTCATAGCACAATATATAATCGCAGGAAAACAAAATATCTCAAagctagatttttccaatatcgtgcagccctcaTGTACATTAACTGTGCAATTCATGCTGAGTATGGCCTGGCATACAGGTTACTGAATGTAAATGCAAATCTTCTGTTGTCTGTGTAGTAATGTCTCAGATATTGTACCTTTTAATGCAAAAATGATAAATGAGTTGTAAAAAACGCACAATAAAAAAGACCAAAGAAGAAGCACCACCGTTTTAATTCAGTTGCTCACATTGAAATGTAACATCAGCACATTTTGGCACATACATCAGTTGTATATATTAACGTTACGTCACTACATTAATATAATTATGTATGCTAATTTTTAACTGCCAACGTGTATCAGCCATCATGTAGTTAAATATAACGGATgtcatttaaatatgtgtgctGTAATATTCCCATGTGGAGTAAGATGATCTTATATTAaagaaatattggaaaaatacaaaaataaaactatatttcttaTAATCCTATAGGTTTTACCCATTTATTACTCTGATTGAAAAACATATTGCCATGTTAAATAATAACAGTAGCCTTATTAGTGTGTAAAAACAATTTGCACAGCAGATCACATGCTCGAGCTTTGGAAATTGAAAGCATGATATGTTTCCGATGTCCTGAAACCAGTGTATCTCAGTtcgtatatgcatgtgtgtgtgtatatatagaaactgtaactttaaatcaCAGTAAATTGTCATCAAATAAGCATAGATTGCATATTTTGAGAACAAAGGCTGACTTTAACATTGCACAATACAACATGtcagaaaaatacaaatacatgcaAATGCAAAAGGAATGTCATTGCTTTTGGATTTTGCTCTGCATTCTTGGATCACTCAGAATATCTGAGTTTGCAGATTACACATAAAGTAAATACCTTTATCCAATGTATAATATTAATCTGAAATAAGCATTTAATTGTACATTGATATGTCTCTCTGCAGCCTCTTCAAACTAATATAATATTAGTCTCACTACAATCATAATCATATGCTTAGACTTAACTTCATTATTGTTAAGCAAGAGAAgtgttaactcattattaataTCAGTTATCTGTGATAGAACACATGTGATTTAACTACTGGCAAAGTGCACAAAAAATATAGACTTTGGACACACAGAGAACAACACCATCCAACTTACTGTTTAGGCACTGAGATTACTGACGAATGCATAAATTACAGATAGATGCTGGATGCATACGTTTATTTCAGAGTATGCATAAGCCAAATATTGCTTGTTACCATTACCACCAACCTAAAGCTATCAAGTTAACTTcgaaatattaatttagattaatgTGCACTACTTCAATAGCTTTGAATAATGCTCTGTATTCATTAATGTGTATGAAATAAAAGCCTTAAACGTGACCTGTAGTTGTCCAGTTGACAGAGATAATGTGGAGACAAATTAGATAGAAAGACGAGACCACAACATCCCAGAAAAAGACTGGTTAATCGTTGACAACAATGTTGTCAATGCTAAAAACATTTCATGCAAATATGTAATTGTATGTATTAACACTTAGAACAGTTATATTGCAGGATATCGACAAAAACATTTAGTCTTACATGTGTGCACAATACGAATAGCCtgttatatttagtcatttatcacACAACCAGTAGACAAATTAATAAAAGACCTGTCGACAAACAATCCTGAGAGTCAAGACTGGAAGAAATATTGTTTTTGCAAGTTAAACAAAAGACAATTGCACAGGTTCCATTCAGAAACACTTTGGATTGTCACCAAATTTACTCTACTTTCCAATACAGTTAGTACTGGTAAGTTTAGTAccttacattcattttctttttaaattgctCTGAGCCTAACATTTGGTGACTCTAAGTTGATCATTTTACTCCCTCTTTTCATTCTGAATCCACAAATTTCCCCATATAGACATCGATCAAACCGGCGATGTTTGGTAAAATACATGATCCGGTGACTCAATGTTGTTACAAAAAGGGGGAATATTTTTGTCATAATGTTATAGAATGACCCTGACAGGGTATTGATATAAAGGAGATTACAGCCATACAATACAATCTAATATTTTAAGTATGAAGTGCTACATTATAATAGATCTCTACTCTGTCACATGAGCCAAGAAACATATCATATTTTATAGGATGATGATCATTACTCAGTGCTACACAATAATGACCATGACACATTTTTAACTATATTACTCTGGGCTAAATTGTTCCATTTAACAACAGTCTGTCTTTACCTTGAGTTTATAGTAGAACGAAAGAGCAGCCTTTGGTGTTTCTGTAAAACTGATCATTATAAACTAGTGAAATTAGtggacttttttttgcattttacctTGTTTTCCTCTTGTCAGTTACTCGCTGTATTAGAAAAAGAGCTGTTCATTTCATTCCTCTTCGAAGCATCTGATTGGCTGCGATGAGCATGACGCTGATGATGAACGCGATGGCGAAGGCACAAATCAAGCTCTTTCGCACACAGGTGTGCTTGACTTGTTGCATGGGACTTTCT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00059039 lncRNA upstream 89175 31983191 ~ 31994554 (+) True XLOC_030195
TCONS_00061730 lncRNA upstream 165593 31911003 ~ 31918136 (+) True XLOC_030192
TCONS_00061729 lncRNA upstream 171651 31904847 ~ 31912078 (+) True XLOC_030191
TCONS_00059031 lncRNA upstream 215360 31867518 ~ 31868369 (+) True XLOC_030190
TCONS_00059025 lncRNA upstream 266893 31813336 ~ 31816836 (+) True XLOC_030188
TCONS_00061732 lncRNA downstream 173586 32260163 ~ 32263220 (+) False XLOC_030204
TCONS_00059058 lncRNA downstream 173586 32260163 ~ 32264060 (+) True XLOC_030204
TCONS_00061733 lncRNA downstream 272303 32358880 ~ 32367481 (+) True XLOC_030206
TCONS_00059073 lncRNA downstream 764262 32850839 ~ 32856096 (+) False XLOC_030210
TCONS_00059076 lncRNA downstream 796123 32882700 ~ 32886071 (+) False XLOC_030211
TCONS_00059046 mRNA upstream 3537 32076109 ~ 32080192 (+) False XLOC_030197
TCONS_00059047 mRNA upstream 3537 32076136 ~ 32080192 (+) True XLOC_030197
TCONS_00059040 mRNA upstream 37432 31995683 ~ 32046297 (+) False XLOC_030196
TCONS_00059042 mRNA upstream 37432 32009080 ~ 32046297 (+) False XLOC_030196
TCONS_00059044 mRNA upstream 37432 32009542 ~ 32046297 (+) False XLOC_030196
TCONS_00059048 mRNA downstream 55213 32141790 ~ 32148529 (+) True XLOC_030199
TCONS_00059049 mRNA downstream 76107 32162684 ~ 32182682 (+) False XLOC_030200
TCONS_00059051 mRNA downstream 119801 32206378 ~ 32217579 (+) False XLOC_030201
TCONS_00059052 mRNA downstream 119946 32206523 ~ 32217575 (+) True XLOC_030201
TCONS_00059053 mRNA downstream 135178 32221755 ~ 32233860 (+) False XLOC_030202
TCONS_00059033 other upstream 139007 31944607 ~ 31944722 (+) False XLOC_030193
TCONS_00059030 other upstream 215101 31860071 ~ 31868628 (+) False XLOC_030190
TCONS_00059020 other upstream 534942 31548312 ~ 31548787 (+) True XLOC_030185
TCONS_00059006 other upstream 1256837 30780600 ~ 30826892 (+) True XLOC_030177
TCONS_00059004 other upstream 1334688 30743846 ~ 30749041 (+) True XLOC_030175
TCONS_00059050 other downstream 92053 32178630 ~ 32182728 (+) True XLOC_030200
TCONS_00059060 other downstream 258612 32345189 ~ 32346131 (+) True XLOC_030205
TCONS_00059063 other downstream 551071 32637648 ~ 32637765 (+) True XLOC_030208
TCONS_00059074 other downstream 771851 32858428 ~ 32859254 (+) True XLOC_030210
TCONS_00059077 other downstream 796130 32882707 ~ 32886909 (+) False XLOC_030211

Expression Profile

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