RNA id: TU2645209



Basic Information


Item Value
RNA id TU2645209
length 958
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G2312561
representative True

Chromosome Information


Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 26442627 ~ 26443584 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AAGCACACATGAGAGAAATGAGAACTGTCGTTGGCACATGTGACACATACAACagtaacccttaacccctaatcgTATCTTTATGTCCACATCCCGTCTCAAAaataaccataaccctagcttcatgtccacaccccgggtcaaccctaaccctagccatgACCCGAACCTTAACTCTAACTTGGAATAACCGTAAACCTAGCTTTAAATAGTAACCACTCAAAATAGGCATCCCCGCCTCACCTCTGCTTAAAAAGCCTCTCTACCTTGCATGTGCAAAACTATCTGACCGTCATTTCACTCTGTCACCCTTCGCTCTCATTGAATAATCCAATTATTTGAATCTCAATTGAATTCCAATCAGTTTTAGTTTTATCAAGGTACACTTGATACACTGTATATGTCTTAAGAATGTGGGTCTTGATCAGGGTCAGACCAGTCTTGATCAGGGTCAGACCAGTCTTGACTCATACTTGCTTGAATTACAAAAATGGAACAGAGTTTTCTCTTTCTGTGAACAACAGTAACAGGCGGCCAGATAGCTATATCCTTGGCATATGCCTAACTCAGGTCCATTCTCTCTGGGgttgggtctgggtctggggctGTAGTTCACACACATGTCCTTGAAATAGCCAAAGTATAACTGCAAAACAAGGTTTTCTCTTGCTGTTTCCGACAATAAGTGCCAGATATAAATGCCAGGCTGAGGCAACTGGCAGGTGGACACAAGTGAGAAAAAGGAAACTGACACAATTACAGCTCTACAAGGTAACACAACCTGGATTACCCATGGATCACATCAAAACCTCTCAGATAAACCCCAGTATTTCATTGGCTATTAGAGAGAGTCAAACGGATCATGTTCTTGTGGGGGCAGAGGATAGTAATGAGGTCTTTAAAGGCTAATCAGTGATATTTACAGCCATTTGTGTTCATTTATATTCCTGATTGATAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2645202 lncRNA upstream 10253 26432160 ~ 26432374 (+) True G2312554
TU2645177 lncRNA upstream 47505 26393820 ~ 26395122 (+) True G2312531
TU2645162 lncRNA upstream 69566 26372853 ~ 26373061 (+) True G2312518
TU2645158 lncRNA upstream 77415 26364991 ~ 26365212 (+) True G2312514
TU2644942 lncRNA upstream 103806 26338529 ~ 26338821 (+) True G2312314
TU2645268 lncRNA downstream 75117 26518701 ~ 26519954 (+) True G2312619
TU2645277 lncRNA downstream 89670 26533254 ~ 26533466 (+) True G2312628
TU2645280 lncRNA downstream 96522 26540106 ~ 26540335 (+) True G2312631
TU2645284 lncRNA downstream 101672 26545256 ~ 26545572 (+) True G2312635
TU2645299 lncRNA downstream 119814 26563398 ~ 26563701 (+) True G2312650
XM_021560279.2 mRNA upstream 178593 26224806 ~ 26264034 (+) False LOC110488181
XM_021560283.2 mRNA downstream 52747 26496331 ~ 26509065 (+) True LOC110488183
XM_021560291.2 mRNA downstream 270527 26714111 ~ 26716280 (+) True LOC110488188
XM_021560292.2 mRNA downstream 304358 26747942 ~ 26750163 (+) True LOC110488189
XM_021560296.2 mRNA downstream 358455 26802039 ~ 26810237 (+) False LOC110488192
XM_021560297.2 mRNA downstream 358455 26802039 ~ 26810237 (+) False LOC110488192
TU2644928 other upstream 117244 26325152 ~ 26325383 (+) True G2312300
TU2644579 other upstream 522827 25919152 ~ 25919800 (+) True G2311978
TU2644105 other upstream 705780 25735194 ~ 25736847 (+) True G2311528
TU2641635 other upstream 2285191 24151687 ~ 24157436 (+) True LOC110488142
TU2641493 other upstream 2461848 23979557 ~ 23980779 (+) False LOC110488133
TU2645416 other downstream 289720 26733304 ~ 26733645 (+) True G2312752
TU2645462 other downstream 373100 26816684 ~ 26820896 (+) False LOC110488193
TU2645463 other downstream 373100 26816684 ~ 26820896 (+) True LOC110488193
TU2645611 other downstream 590215 27033799 ~ 27039185 (+) True G2312933
TU2645715 other downstream 754260 27197844 ~ 27202811 (+) True LOC118946485

Expression Profile