RNA id: TCONS_00059057


Basic Information

Item Value
RNA id TCONS_00059057
length 5802
RNA type mRNA
GC content 0.48
exon number 39
gene id XLOC_030203
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 32246872 ~ 32257316 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAGTACGGACGCGGAGATGGCCGTTTATGGCAAGGCTGCCATTTACCTCCGTAAGCCTGAGAAGGAAAGAATTGAGGCTCAGAACAAACCATTTGATGCCAAATCTGCTTGCTATGTGGTTGATGACAAAGAGCTGTACGTCAAGGGAACAATCAAGAGCAGAGACGGTGGCAAAGTCACCGTTATTACACTTGACACTAAGGAGGAGAGAGTTGCTAAGGAGGAAGATGTCCACCCAATGAATCCTCCCAAGTTTGACAAGATTGAGGACATGGCCATGATGACCCATCTCAATGAACCCTCTGTGCTGTATAACCTCAAAGAGCGTTATGCAGCATGGATGATCTACACCTACTCTGGACTGTTCTGCGCCACTGTAAACCCCTACAAGTGGCTCCCAGTGTATGACGCAGAAGTGGTTGCTGCCTACAGAGGCAAAAAGCGTATGGAGGCTCCACCCCACATCTTCTCTGTCTCTGACAACGCCTATCAGTTCATGTTGACTGACAGAGAGAACCAGTCTGTCCTGATTACTGGAGAATCTGGTGCTGGAAAGACTGTGAACACCAAACGTGTCATTCAGTACTTTGCCACCGTTGCAGTTCAGGGCGGTGACAAGAAGAAAGAGCAGACTCCAGGCAAAATGCAgGGCTCTCTTGAGGATCAGATCATTGCTGCCAACCCTCTGCTTGAGGCTTATGGTAATGCCAAGACTGTGAGAAATGACAACTCCTCTCGTTTTGGTAAATTCATCAGAATTCATTTCGGTACAACTGGAAAACTGGCCAGTGCTGACATTGAGACATATCTGCTGGAGAAATCTAGAGTGACATTCCAGCTTCCAGATGAGAGAGGCTACCACATCTTCTACCAGATGATGACCAACCACAAGCCTGAGCTGATTGAAATGACGCTCATCACCACCAACCCCTATGACTTCCCCATGTGCAGTCAAGGTCAGATCACAGTGGCAAGCATTGATGATAAAGAGGAGCTGGTTGCAACTGATACTGCTATTGACATTCTGGGCTTCACTGGTGAAGAGAAAATGGGCATCTACAAGTTCACTGGAGCTGTGCTTCATCATGGTAACATGAAGTTCAAGCAGAAGCAGCGTGAGGAGCAGGCAGAGCCTGATGGCACAGAGGAGGCTGACAAAATCTCTTACCTTCTGGGTTTGAACTCTGCTGAAATGCTGAAGGCTTTGTGCTACCCCAGAGTCAAGGTCGGAAATGAGTTTGTGACCAAAGGACAGACTGTGCCACAGGTGTACAACTCTGTTAGCGCCTTGTCCAAATCTATCTATGAGAGGATGTTCTTGTGGATGGTCATTCGTATCAACCAGATGTTGGacacaaaacaacaaagaaatttCTTCATTGGTGTGCTGGATATTGCTGGTTTTGAGATCTTTGATTTCAACAGCATGGAGCAGCTGTGCATCAACTTCACTAATGAGAAACTGCAACAGTTTTTCAACCACCACATGTTTGTGCTGGAACAAGAGGAGTACAAGAAGGAGGGCATTGTTTGGGAGTTCATTGACTTCGGCATGGACTTGGCCGCTTGCATTGAGCTCATTGAGAAGCCTATGGGAATCTTCTCCATCCTTGAAGAGGAGTGCATGTTCCCCAAGGCTACAGACACTTCCTTCAAGAACAAGCTGTATGATCAGCATCTTGGCAAGTGCAATGCTTTCCAGAAACCAAGGCCTCAAAAAGGCAAGGCTGAGGCTCACTTCTCCCTGGTCCACTATGCTGGAACTGTGGACTACAACGTTTCTGGCTGGCTGGACAAGAACAAGGATCCACTGAACGAGTCTGTTGTGCAGCTGTACCAGAAGTCTTCTGTCAAACTGTTGGCTACTCTCTACCCACCCGTCGTTGAGGacACTTCAAAGAAGGGAGGCAAGAAGAAGGGTGGTTCCATGCAGACTGTGTCTTCTCAGTTCAGGGAGAACTTGGGCAAGCTAATGACCAACTTGAGGAGCACTCACCCTCATTTTGTGCGTTGTCTGATTCCCAATGAGTCCAAGACTCcagGTCTTATGGAGAACTTCCTAGTTATCCACCAGCTGAGGTGTAACGGTGTACTGGAGGGTATCAGAATCTGTAGAAAGGGTTTCCCAAGCAGAATTCTTTATGCCGACTTCAAGCAGAGATACAAGGTGTTGAATGCCAGTGTTATCCCAGAGGGACAGTTCATTGACAACAAGAAGGCCAGTGAGAAACTCCTGGGATCTATTGATGTTAATCATGATGAGTACAGATTTGGACACACAAAGGTGTTCTTCAAAGCTGGTCTGCTGGGTACTCTTGAGGAGATGCGTGATGAGAAACTGGCTAGTCTGGTCACAATGACTCAGGCTCTCTGCCGTGCTTATCTGATGAGGAGAGAGTTTGTGAAGATGATGGAGAGGAGGGAGTCCATTTACACCATCCAGTACAACATCCGCTCATTCATGAATGTCAAACACTGGCCATGGATGAAGGTTTACTACAAGATTAAGCCTCTGCTGAAGAGTGCTGAGACTGAGAAAGAACTGGCAAACATGAAAGAGGACTTTGTCAAATGCAAAGAAGATCTTGTCAAGGCTGAAGCTAAAAAGAAGGAGCTGGAAGAGAAGATGGTGGCACTGCTGCAAGAGAAAAATGATCTGCAGCTGGCAGTGGCTTCTGAAGCTGAAAATCTCTCAGATGCTGAGGAGAGGTGTGAGGGTCTGATCAAGAGCAAAATCCAGCTTGAGGCTAAACTCAAAGAGACAACTGAGAGACTGGAGGATGAGGAAGAAATCAATGCTGAACTGACAGCCAAGAAGAGAAAACTGGAGGACGAGTGCTCTGAGCTGAAGAAAGACATTGATGACCTGGAGCTCACCTTGGCTAAAGTGGAAAAGGAGAAACATGCCACTGAGAATAAGGTTAAGAACTTGACAGAGGAAATGGCATCTCAGGATGAGAGCATTGCCAAGCTTACAAAGGAGAAGAAAGCCCTCCAAGAGGCACATCAGCAGACTCTGGATGATCTTCAGGCTGAGGAGGACAAAGTCAACACCCTGACCAAATCCAAGACAAAGCTTGAGCAGCAAGTTGATGATCTTGAGGGTTCCCTTGAACAAGAAAAGAAGCTCCGTATGGACCTGGAGAGAGCTAAGAGAAAGCTTGAAGGAGATCTAAAATTGGCCCAAGAGTCTATCATGGACCTGGAAAATGACAAGCAGCAGTCtgaagagaaaattaaaaaGAAAGACTTTGAAACAAGCCAGCTGCTCAGCAAGATTGAAGATGAACAATCCTTGGGTGCTCAGCTCCAGAAAAAGATCAAGGAGcttcagGCTCGCATTGAGGAACTGGAGGAAGAGATTGAGGCTGAGCGTGCTGCTCGTGCCAAGGTTGAGAAGCAGAGAGCAGATCTCTCCAGGGAACTTGAGGAGATCAGTGAGAGGCTTGAGGAGGCTGGAGGAGCCACTGCTGCTCAAATCGAGATGAATAAGAAGCGTGAAGCTGAATTCCAGAAGCTGCGTCGTGATCTTGAAGAGTCCACCCTTCAGCATGAAGCTACTGCTGCTGCCCTGCGCAAGAAGCAGGCAGACAGTGTGGCTGAGCTGGGAGAGCAAATCGACAACCTCCAGCGTGTCAAGCAGAAGCTTGAGAAAGAGAAGAGTGAATACAAAATGGAGATCGATGATCTCTCCAGCAATATGGAGGCTGTCGCCAAAGCAAAGGCCAATCTTGAGAAGATGTGTCGCACACTTGAGGATCAACTTAGTGAAATAAAGTCCAAGAGTGATGAGAACCTTCGCCAGATAAATGATCTCAGTGCTCAAAGAGCAAGACTTCAAACTGAGAATGGTGAGTTTGGCCGTCAGCTGGAGGAGAAAGAAGCTCTGGTTTCTCAGCTCACAAGAGGAAAACAGGCTTTCACTCAGCAAATTGAGGAGCTTAAGAGGCAGATTGAAGAGGAGGtcaagGCTAAGAACGCACTGGCCCATGCTGTACAATCAGCCCGTCATGACTGCGACCTGCTTCGTGAGCAGTTTGAGGAGGAGCAGGAAGCAAAGGCTGAGCTGCAGCGGGGAATGTCAAAGGCAAACAGTGAGGTTGCTCAGTGGAGAACCAAATATGAAACTGATGCCATCCAGCGCACAGAAGAACTTGAAGAATCCAAGAAGAAACTGGCTCAGCGTCTGCAAGAGGCAGAGGAACAAATTGAGGCAGTGAACTCCAAATGTGCATCTCTGGAGAAGACCAAACAGAGACTCCAGGGTGAAGTGGAGGACCTCATGATTGATGTGGAGAGAGCCAATTCTTTGGCTGCCAACCTTGACAAAAAGCAGAGAAACTTTGACAAGGTCCTGGCAGAATGGAAACAGAAATATGAGGAAGGTCAGGCAGAGCTGGAAGGTGCCCAGAAAGAAGCTCGTTCACTCAGCACTGAGCTGTTCAAGATGAAGAACTCCTATGAGGAGACTCTGGATCAGCTGGAGACCCTCAAGAGAGAGAACAAGAATCTGCAGCAGGAGATTTCAGATCTGACAGAGCAGATAGGTGAGACTGGTAAGAGCATCCATGAGCTGGAAAAGGCCAAGAAGACAGTGGAGACTGAGAAGGCAGAGATTCAGACCGCCCTAGAAGAGGCTGAAGGCACCCTGGAGCATGAGGAGTCCAAGATTCTTCGTGTCCAGCTTGAGCTAAACCAGGTCAAGGGTGAGATTGACAGGAAGCTTGCAGAGAAGGATGAGGAGATAGAGCAGATCAAGAGGAACAGTCAGAGAGTTACTGAAGCCATGCagagcactctggactctgaagtCAGAAGCAGGAATGATGCTCTCAGAATCAAGAAGAAGATGGAGGGAGACCTTAATGAAATGGAGATTCAGCTGAGCCATGCCAACCGCCAGGCTGCTGAGGCCCAGAAACAGCTCAGGAATGTTCAGTCACAACTCAAGGATGCCCAGCTGCACCTTGATGATGCTGTGAGAGCACAGGAAGACATGAAGGAGCAGGTGGCCATGGTGGAGCGCAGAAACACTCTGATGCAGTCTGAGATCGAAGAGCTGAGAGCTGCTCTGGAGCAGACAGAGAGAGGACGCAAAGTGGCTGAACAAGAGCTGGTGGATGCCAGTGAGCGTGTTGGACTTTTGCACTCTCAGAACACAAGTCTTCTGAACACGAAGAAGAAGCTTGAGTCTGACCTTGTTCAGATCCAAAGTGAAGTTGAAGACACTGTACAGGAAGCCAGAAATGCTGAGGAGAAGGCCAAGAAGGCCATCACTGATGCTGCAATGATGGCAGAGGAGCTGAAGAAGGAGCAGGACACCAGTGCTCACCTTGAGAGGATGAAGAAGAATCTGGAGATCACAGTGAAAGACCTGCAGCACCGTCTGGATGAAGCTGAGAATCTGGCCATGAAGGGAGGAAAGAAACAACTCCAGAAACTGGAGTCCAGAGTTCGTGAGCTTGAGAGCGAAATCGATGCAGAGCAGAGACGTGGAGCTGATGCTGTTAAAGGCGTCCGCAAATATGAGAGGAGAGTCAAGGAGCTCACCTACCAGACTGAGGAGGACAAGAAGAACATCAACAGGCTGCAGGATCTGGTTGATAAGCTTCAGCTGAAGGTCAAGGCTTACAAGAGACAGTCTGAAGAAGCTGAGGAACAAGCCAACTCTCACCTGTCCAAGTTGAGGAAGGTGCAGCATGAGCTGGAGGAGGCTGAGGAGCGCGCTGACATTTCTGAATCCCAGGTCAACAAGCTCAGAGCCAAGAGCCGTGACGCTGGAAAGgcTAAGGAAGAATGA

Function

GO:

id name namespace
GO:0016459 myosin complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003774 motor activity molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060531-50 Predicted to enable ATP binding activity; actin filament binding activity; and cytoskeletal motor activity. Predicted to be part of myosin complex. Is expressed in caudal fin; cephalic musculature; muscle; and trunk. Human ortholog(s) of this gene implicated in arthrogryposis multiplex congenita; disease of cellular proliferation; distal arthrogryposis type 7; inclusion body myositis; and proximal myopathy and ophthalmoplegia. Orthologous to several human genes including MYH1 (myosin heavy chain 1); MYH2 (myosin heavy chain 2); and MYH4 (myosin heavy chain 4).

Ensembl:

ensembl_id ENSDART00000182649

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061731 lncRNA upstream 160733 32083729 ~ 32086577 (+) True XLOC_030198
TCONS_00059039 lncRNA upstream 252756 31983191 ~ 31994554 (+) True XLOC_030195
TCONS_00061730 lncRNA upstream 329174 31911003 ~ 31918136 (+) True XLOC_030192
TCONS_00061729 lncRNA upstream 335232 31904847 ~ 31912078 (+) True XLOC_030191
TCONS_00059031 lncRNA upstream 378941 31867518 ~ 31868369 (+) True XLOC_030190
TCONS_00061732 lncRNA downstream 2914 32260163 ~ 32263220 (+) False XLOC_030204
TCONS_00059058 lncRNA downstream 2914 32260163 ~ 32264060 (+) True XLOC_030204
TCONS_00061733 lncRNA downstream 101631 32358880 ~ 32367481 (+) True XLOC_030206
TCONS_00059073 lncRNA downstream 593590 32850839 ~ 32856096 (+) False XLOC_030210
TCONS_00059076 lncRNA downstream 625451 32882700 ~ 32886071 (+) False XLOC_030211
TCONS_00059055 mRNA upstream 13448 32228538 ~ 32233862 (+) True XLOC_030202
TCONS_00059053 mRNA upstream 13450 32221755 ~ 32233860 (+) False XLOC_030202
TCONS_00059054 mRNA upstream 13450 32222303 ~ 32233860 (+) False XLOC_030202
TCONS_00059051 mRNA upstream 29731 32206378 ~ 32217579 (+) False XLOC_030201
TCONS_00059059 mRNA downstream 87938 32345187 ~ 32355289 (+) False XLOC_030205
TCONS_00059061 mRNA downstream 232989 32490238 ~ 32498736 (+) False XLOC_030207
TCONS_00059062 mRNA downstream 233346 32490595 ~ 32498557 (+) True XLOC_030207
TCONS_00059064 mRNA downstream 533996 32791245 ~ 32793481 (+) True XLOC_030209
TCONS_00059065 mRNA downstream 558496 32815745 ~ 32833358 (+) False XLOC_030210
TCONS_00059050 other upstream 64582 32178630 ~ 32182728 (+) True XLOC_030200
TCONS_00059033 other upstream 302588 31944607 ~ 31944722 (+) False XLOC_030193
TCONS_00059030 other upstream 378682 31860071 ~ 31868628 (+) False XLOC_030190
TCONS_00059020 other upstream 698523 31548312 ~ 31548787 (+) True XLOC_030185
TCONS_00059006 other upstream 1420418 30780600 ~ 30826892 (+) True XLOC_030177
TCONS_00059060 other downstream 87940 32345189 ~ 32346131 (+) True XLOC_030205
TCONS_00059063 other downstream 380399 32637648 ~ 32637765 (+) True XLOC_030208
TCONS_00059074 other downstream 601179 32858428 ~ 32859254 (+) True XLOC_030210
TCONS_00059077 other downstream 625458 32882707 ~ 32886909 (+) False XLOC_030211
TCONS_00059080 other downstream 627956 32885205 ~ 32885331 (+) True XLOC_030212

Expression Profile

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