RNA id: TU2645268


Basic Information

Item Value
RNA id TU2645268
length 1254
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G2312619
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 26518701 ~ 26519954 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctgcagagagctgggaccaaagtaacaaagcctaccatcagtaacacactacgccgccagggactaaaatcctgcagtgccagacgtgtccccctgcttaagccagtacatgtccaggcccgtctgaagtttgctagagagcatttggatgatccagaagaagattgggagaatgtcatatggtcagatgaaaccaaaatataactttttggtaaaaactctactcgttgtgtttggaggacaaagaatgcagagttgcatccaaagaacaccatacctactgggaagcatgggggtggaaacatcatgctttggggctgtttttctgcaacgggactaggacgactgatccgtgtaaaggaaagaatgaatggggccatgtatcatgagattttgagtgaaaacctccttccatcagcaagggcattgaagatgaaacgtggctgggtctttcagcatgacaatgatcccaaacacaccgcccgggaaaGTAGAAGTAgattcgtaagaagcatttcaaggtcctagagtggcctagccagtctccagatctcaaccccataaaaaatatttggagggagttgaaagtccgtgttgcccagcaacagccccaaaacatcactgctctagaggagatctgcatggaggaatgggccaaaataccagcaacagtgtgtgaagtattgagataaacttttgttattgaccaaatacttattttccaccataatttgcaaataaattcattaaaaatcctacaatgtgattttctggattttttttattcattttgtctgtcatagttgaagtgtacatatgatgaaaattacaggcctctctcatcttgttaagtgggagaacatgcacaattgatggctgactaaaaacttttttgccccactgtatgtgcagatgatacagtcttatactcagctggcccctccccggattttatgttaaacgctctacaacaaagcgttcttagtgtccaacaagctttctctgcccttaaccttgttctgaacacttcCAAAAACAAAGGCCATGTGGTTTGGTAacaagaatgcccctcttcccaccgGTATGATTACTACCTCTGTACGTTtaaagcttgaggtagtcacctcatacaagtacttcgtagtatggctagacggtacactgtccatCTCTCAGCGCATATCCAAGCGCTATTCTgcaacactcaaactggacagttttatctccatcccTACATTCaaagacactcttac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2645209 lncRNA upstream 75117 26442627 ~ 26443584 (+) True G2312561
TU2645202 lncRNA upstream 86327 26432160 ~ 26432374 (+) True G2312554
TU2645177 lncRNA upstream 123579 26393820 ~ 26395122 (+) True G2312531
TU2645162 lncRNA upstream 145640 26372853 ~ 26373061 (+) True G2312518
TU2645158 lncRNA upstream 153489 26364991 ~ 26365212 (+) True G2312514
TU2645277 lncRNA downstream 13300 26533254 ~ 26533466 (+) True G2312628
TU2645280 lncRNA downstream 20152 26540106 ~ 26540335 (+) True G2312631
TU2645284 lncRNA downstream 25302 26545256 ~ 26545572 (+) True G2312635
TU2645299 lncRNA downstream 43444 26563398 ~ 26563701 (+) True G2312650
TU2645319 lncRNA downstream 68511 26588465 ~ 26588769 (+) True G2312664
XM_021560283.2 mRNA upstream 9636 26496331 ~ 26509065 (+) True LOC110488183
XM_021560279.2 mRNA upstream 254667 26224806 ~ 26264034 (+) False LOC110488181
XM_021560291.2 mRNA downstream 194157 26714111 ~ 26716280 (+) True LOC110488188
XM_021560292.2 mRNA downstream 227988 26747942 ~ 26750163 (+) True LOC110488189
XM_021560296.2 mRNA downstream 282085 26802039 ~ 26810237 (+) False LOC110488192
XM_021560297.2 mRNA downstream 282085 26802039 ~ 26810237 (+) False LOC110488192
XM_021560298.2 mRNA downstream 282085 26802039 ~ 26810237 (+) True LOC110488192
TU2644928 other upstream 193318 26325152 ~ 26325383 (+) True G2312300
TU2644579 other upstream 598901 25919152 ~ 25919800 (+) True G2311978
TU2644105 other upstream 781854 25735194 ~ 25736847 (+) True G2311528
TU2641635 other upstream 2361265 24151687 ~ 24157436 (+) True LOC110488142
TU2641493 other upstream 2537922 23979557 ~ 23980779 (+) False LOC110488133
TU2645416 other downstream 213350 26733304 ~ 26733645 (+) True G2312752
TU2645462 other downstream 296730 26816684 ~ 26820896 (+) False LOC110488193
TU2645463 other downstream 296730 26816684 ~ 26820896 (+) True LOC110488193
TU2645611 other downstream 513845 27033799 ~ 27039185 (+) True G2312933
TU2645715 other downstream 677890 27197844 ~ 27202811 (+) True LOC118946485

Expression Profile