RNA id: TU2645891


Basic Information

Item Value
RNA id TU2645891
length 1545
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G2313195
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 27489728 ~ 27491272 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACAGAAGATCACTTAAGAAATTCATTTTTCTGGTTATATTAAACATTTATTAGCTATGCATGAGGTTTACAAGTGCACAGGACATTGACATGAGGACACAGTAGGTTATAGCATGTGAAATGCTTGCCAGAAGTATAGCACATAAACCAAAAAAACGAGCGTCTTGGGACGTCCTTTCTTCTAAATGACAGGCCGTTAGTGACCTGTGGCTGTAGTCTGCTTGATGCACCTTCCACATGACTGGTGACAATAAAAGAGGAGCACTTCAACATTGATCACAGCGTTTTAATCAAGAGGAGATAATGAGACTTTGAGTTAATTATAGAATTAAAGGCAGGAAGTGGCTGCTAGGTAAGAGCTCATCAACATGATTAAAAGGAACGGAATAGACATCAATGAAAACTAGATCAAAATGTTCCTGTAGCTCACTGGCATTATTCATTGTTGGACATACAGGATCTGACAATAGGTGTATAATTGAATTCTGTTCTGAGCATCACTGTGGAATGAATATGATGCTCaaaatgagtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgcgtgtgtgagcgtATATTTGTGTGTTATTGAGTTTTAATAtctttgtggggaccagaagtcctcacaaggacgGTAAAACCAGTCCTCAAAAGGGGTTAGAGGTTTGGgcttaaggtttgggttaaggaaAACAGGATTtttaatgggaatcaattgtttggtccccacaagaatagaaaAACaaatctgagtgtgtgtgtgtgtgtgtgtgtgtgtctgcagagcAAGAGAACGCCGTGAATAGAGCTGTCTCACGGTGACAGCCAGGATCGTGACATCCTTTACGTACATTCATAATCAAGTAAGCCATGTAACTGCTCTTACTCTGCATTAACTCAGACAGGATAATCCCAGATAAGCCTTGGCATTATAAGCCACTCCAGAGTGGAAGTGGAGCCACTAGCTGCTATCCCCCGACGGTGATGAGagagttgacacacacacacacacacacaccgcttcAGTGTTATTGTCCGGGGGCCTGGCCTCAGAGTGAAAAGAGAATCACTTCCTCTAATGGAAAACTATTGTCTGACTGCTACTCCACTGACAACATCAGTTGAGAGGAAtagacatagggaataggatgccatttgggatgcagacacagAGTAGAGTTGTTTTAAACAAGGGAAGCTATTTTGGGATTTCCACTGCCCTTGTGGCCTGTTCAGATGATCTCAGACCAGTTTGGGAACCCTTTGTCCTGAATGCTGTTTTTCTGAATGCCTTTTTTCCTTCCTCTGTATTTCACTGACTCTAGACTATCTAAGCTTCTTGGCATACAATAAGGCACTGCAAGTGAATTATTTATTAATTTGAGTGGATTATATATACGGTAATGAACAAACCAAATGCAATTAGAAGTGTCGTTTTGAGCAATAGGATGTCAggcctgtggcatactgcattatTCATTTCTTTCTCTTCCCTTGCAGTCGGGTtacacagcagtggaggctggtgggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2645881 lncRNA upstream 15906 27473518 ~ 27473822 (+) True G2313185
TU2645821 lncRNA upstream 104309 27384832 ~ 27385419 (+) False G2313129
TU2645822 lncRNA upstream 104309 27384878 ~ 27385419 (+) True G2313129
TU2645823 lncRNA upstream 105002 27383083 ~ 27384726 (+) True G2313130
TU2645751 lncRNA upstream 229977 27258969 ~ 27259751 (+) True G2313059
TU2645959 lncRNA downstream 99211 27590483 ~ 27653086 (+) True G2313263
TU2646111 lncRNA downstream 324684 27815956 ~ 27832698 (+) True LOC110488197
TU2646168 lncRNA downstream 405191 27896463 ~ 27961415 (+) True G2313453
TU2646172 lncRNA downstream 412112 27903384 ~ 27903946 (+) True G2313457
TU2646290 lncRNA downstream 592136 28083408 ~ 28084698 (+) False LOC110488207
XM_036971567.1 mRNA upstream 114146 27316604 ~ 27375582 (+) True LOC110489415
XM_036970931.1 mRNA upstream 213282 27203437 ~ 27276446 (+) False LOC110488195
XM_036970932.1 mRNA upstream 213282 27203437 ~ 27276446 (+) True LOC110488195
XM_036971324.1 mRNA upstream 286922 27197850 ~ 27202806 (+) False LOC118946485
XM_021560301.2 mRNA upstream 306442 27141022 ~ 27183286 (+) True LOC110488194
XR_005041346.1 mRNA downstream 44679 27535951 ~ 27536309 (+) True LOC118946492
XM_036971193.1 mRNA downstream 309295 27800567 ~ 27833055 (+) False LOC110488197
XM_036971192.1 mRNA downstream 324605 27815877 ~ 27833055 (+) False LOC110488197
XM_036971194.1 mRNA downstream 324605 27815877 ~ 27833055 (+) False LOC110488197
XM_021560309.2 mRNA downstream 345390 27836662 ~ 27848059 (+) True parp10
TU2645715 other upstream 286917 27197844 ~ 27202811 (+) True LOC118946485
TU2645611 other upstream 450543 27033799 ~ 27039185 (+) True G2312933
TU2645462 other upstream 668832 26816684 ~ 26820896 (+) False LOC110488193
TU2645463 other upstream 668832 26816684 ~ 26820896 (+) True LOC110488193
TU2645416 other upstream 756083 26733304 ~ 26733645 (+) True G2312752
TU2645893 other downstream 1827 27493099 ~ 27493735 (+) True G2313197
TU2646250 other downstream 552683 28043955 ~ 28045917 (+) False kcng2
TU2646251 other downstream 552683 28043955 ~ 28045917 (+) False kcng2
TU2646260 other downstream 552683 28043955 ~ 28045917 (+) False kcng2
TU2646261 other downstream 552683 28043955 ~ 28047334 (+) False kcng2

Expression Profile