RNA id: TU2647673


Basic Information

Item Value
RNA id TU2647673
length 259
lncRNA type intronic
GC content 0.46
exon number 2
gene id G2314802
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 28403246 ~ 28403552 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAacatcccttagccgtggtatattggccatatatcacaccccctcgggccttattgcttaagtaactCATATTTGAAACACATTTATCGACAATTAACAGATTGTGCAAGATGgatgtcttcctcctcctccttcttgcaGCGTTCTCAAGGCCGATGGACAACCAGTGCTAACCCAGCACTAActgttcctgttctgttctaTGTCCTGTCCtatctctgtcctgtcctatCTCTGTCCTGTCCTAACTCTGTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2647619 lncRNA upstream 18358 28382696 ~ 28384888 (+) True LOC110488210
TU2647614 lncRNA upstream 18422 28382696 ~ 28384824 (+) False LOC110488210
TU2647616 lncRNA upstream 18422 28382696 ~ 28384824 (+) False LOC110488210
TU2647608 lncRNA upstream 18471 28382696 ~ 28384775 (+) False LOC110488210
TU2647611 lncRNA upstream 18471 28382696 ~ 28384775 (+) False LOC110488210
TU2647707 lncRNA downstream 34455 28438007 ~ 28442117 (+) True G2314830
TU2647767 lncRNA downstream 112900 28516452 ~ 28553988 (+) True G2314883
TU2647869 lncRNA downstream 259284 28662836 ~ 28788903 (+) True G2314975
TU2647882 lncRNA downstream 298455 28702007 ~ 28708584 (+) True G2314988
TU2648197 lncRNA downstream 391288 28794840 ~ 28795053 (+) True G2315279
XM_036971818.1 mRNA upstream 18358 28299685 ~ 28384888 (+) False LOC110488210
XR_005041415.1 mRNA upstream 18358 28299685 ~ 28384888 (+) False LOC110488210
XR_005041416.1 mRNA upstream 18358 28299685 ~ 28384888 (+) False LOC110488210
XM_021560322.2 mRNA upstream 311416 28083355 ~ 28091830 (+) False LOC110488207
XM_036970615.1 mRNA upstream 311416 28083392 ~ 28091830 (+) False LOC110488207
XM_021560335.2 mRNA downstream 32514 28436066 ~ 28437991 (+) True LOC110488215
XM_021560336.2 mRNA downstream 65198 28468750 ~ 28471360 (+) True LOC110488216
XM_036970818.1 mRNA downstream 579636 28983188 ~ 28991659 (+) False LOC110489419
XM_036970819.1 mRNA downstream 582669 28986221 ~ 28991659 (+) False LOC110489419
XM_036970997.1 mRNA downstream 614009 29017561 ~ 29042431 (+) False LOC110489420
TU2646261 other upstream 355912 28043955 ~ 28047334 (+) False kcng2
TU2646250 other upstream 357329 28043955 ~ 28045917 (+) False kcng2
TU2646251 other upstream 357329 28043955 ~ 28045917 (+) False kcng2
TU2646260 other upstream 357329 28043955 ~ 28045917 (+) False kcng2
TU2646262 other upstream 357329 28043955 ~ 28045917 (+) True kcng2
TU2647771 other downstream 116703 28520255 ~ 28563595 (+) True G2314887
TU2647881 other downstream 295188 28698740 ~ 28703424 (+) True G2314987
TU2649449 other downstream 1518832 29922384 ~ 29930951 (+) False G2316421
TU2650483 other downstream 2414476 30818028 ~ 30819016 (+) True tmem79a
TU2650554 other downstream 2430178 30833730 ~ 30835101 (+) True G2317455

Expression Profile