RNA id: TU2647881



Basic Information


Item Value
RNA id TU2647881
length 1199
RNA type TUCP
GC content 0.53
exon number 2
gene id G2314987
representative True

Chromosome Information


Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 28698740 ~ 28703424 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gttgtagtgtgggctgcagttgtggtgacaggggatgTTGTAGTAGCAActgctgttgaggtaccagctgcagttgtggtggcattggctgttgtagtgtgggctgcagttgtggtgacaggggtagttgtagtagcagctgcagttgcaGTAGCAGCCTCTGTCGTAAGAGTGACTGGAGTTGTGGCGGCactggctgttgtagtgtgggctgcagttgtggttacaggggatgttgtagtggtaactgctgttgaggtaccagctgcagttgtggtggcagaagctgttgtagtgtgggctgcagttgtggttaaaCGGAAAgatgtagtggcaactgctgttgtagtaccagctgcagttgtggtggcattggctgttgtagtgtgggctgcaattgtggtgacaggtgaagttgtagtaacagctgcagttgtagtggcagcctctgtcgtacgagtggctgcagttgtggtggcagaagctgttgtagtgtgggctgcagttgtggttacaggggatgttgtagtggtaactgctgttgaggtactagctgcagttgtggtggcattggttgttgtagtgtgggctgcagttgtggtgacaggtgaagttgtagtagcagctgcagttgtagtggcagcctctgtcgtaagagtggctgcagttgtggtggcattggctgttctagtatgggctgcagttgtggttgcaggggaagttgtagtggcagaTGCAGTTGTAGTGACAGCCTCTGTCGTAGGagcggctgcagttgtggtggcattggctgttctagtatgggctgcagttgtggttacaggggaagttgtagtagcagctgcagttgtaatggcagcctctgtcgtaagagtggctgcagttgtggtggcagaagcagttgtagtgtgggctgcagttgtggtgacaggtgaagttgtagtagcagctgcagttgtagtggcagcctctgtcgtaagagtggctgcagttgtggtggcacaAGCTGTTGAAGTGTGGactgcagttgtggttgcaggggaagttgtagtagcagctgcagttgtagtaccagctgcagttgtggtggcattggctgttgtagtgtgggctgcagttgtggtgacaggtgaagttgtagtagcacctgcagttgtagtggcagcctctgtcgtaagagtggctgcagttgtggtggc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2647767 lncRNA upstream 144752 28516452 ~ 28553988 (+) True G2314883
TU2647707 lncRNA upstream 256623 28438007 ~ 28442117 (+) True G2314830
TU2647673 lncRNA upstream 295188 28403246 ~ 28403552 (+) True G2314802
TU2647619 lncRNA upstream 313852 28382696 ~ 28384888 (+) True LOC110488210
TU2647616 lncRNA upstream 313916 28382696 ~ 28384824 (+) False LOC110488210
TU2648197 lncRNA downstream 91416 28794840 ~ 28795053 (+) True G2315279
TU2648212 lncRNA downstream 103554 28806978 ~ 28807196 (+) True G2315294
TU2648220 lncRNA downstream 106816 28810240 ~ 28810537 (+) True G2315302
TU2648222 lncRNA downstream 107360 28810784 ~ 28811014 (+) True G2315304
TU2648224 lncRNA downstream 109530 28812954 ~ 28813283 (+) True G2315306
XM_021560336.2 mRNA upstream 227380 28468750 ~ 28471360 (+) True LOC110488216
XM_021560335.2 mRNA upstream 260749 28436066 ~ 28437991 (+) True LOC110488215
XM_036971818.1 mRNA upstream 313852 28299685 ~ 28384888 (+) False LOC110488210
XM_036970818.1 mRNA downstream 279764 28983188 ~ 28991659 (+) False LOC110489419
XM_036970819.1 mRNA downstream 282797 28986221 ~ 28991659 (+) False LOC110489419
XM_036970997.1 mRNA downstream 314137 29017561 ~ 29042431 (+) False LOC110489420
XM_021560360.2 mRNA downstream 466415 29169839 ~ 29215141 (+) False LOC110488225
XM_021560361.2 mRNA downstream 466415 29169839 ~ 29215141 (+) False LOC110488225
TU2647771 other upstream 135145 28520255 ~ 28563595 (+) True G2314887
TU2646261 other upstream 651406 28043955 ~ 28047334 (+) False kcng2
TU2646250 other upstream 652823 28043955 ~ 28045917 (+) False kcng2
TU2646251 other upstream 652823 28043955 ~ 28045917 (+) False kcng2
TU2646260 other upstream 652823 28043955 ~ 28045917 (+) False kcng2
TU2649449 other downstream 1218960 29922384 ~ 29930951 (+) False G2316421
TU2650483 other downstream 2114604 30818028 ~ 30819016 (+) True tmem79a
TU2650554 other downstream 2130306 30833730 ~ 30835101 (+) True G2317455
TU2650704 other downstream 2394195 31097619 ~ 31127687 (+) False G2317562
TU2650705 other downstream 2394195 31097619 ~ 31127687 (+) False G2317562

Expression Profile