RNA id: TU2648734


Basic Information

Item Value
RNA id TU2648734
length 510
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G2315787
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 29350355 ~ 29350864 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CctctccctctgaccagcagaaacacaaacaattatcacaagaccacttctggttaccttcaccgattccacagcacccaactctgttttcacccaccctgaaaccacaaatggattagccaaaaggcaagggtccacttttccaaaaacttcacttctactgtcacagactcatctttatcctgaccctcAGTGCAAGCCTCATGCTCTGAGAACTTCACCAAGCCTACCATCTCCAATACTTTGACCTCATTCACCTCCTCCTCTGTATTCCAAGTATAcgtctccttatgataatactgcacttcTCCTGACATACATCTTGTTCTTGCCTTCTCAAGAGACGCCATTTAACTGGCTGTCACAATCTCCGTACAATCAGCACAAACCCCTCGAGATGTAGCGCTCAACAGTGCATCCCACTAATAAAGCAGCTGCTTCGTCTTGATGTTGTTCTTCATCAAAAGCTACCGCAACGCTTTTCCATTTCAAACAAGCGCGCTCTTCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2648733 lncRNA upstream 339 29349460 ~ 29350016 (+) True G2315786
TU2648717 lncRNA upstream 22185 29326886 ~ 29328170 (+) True G2315770
TU2648666 lncRNA upstream 48397 29266542 ~ 29301958 (+) True G2315734
TU2648611 lncRNA upstream 78726 29213894 ~ 29271629 (+) True LOC110488225
TU2648491 lncRNA upstream 308027 29042050 ~ 29042328 (+) True LOC110489420
TU2648719 lncRNA downstream 42983 29393847 ~ 29395564 (+) True G2315772
TU2648769 lncRNA downstream 55211 29406075 ~ 29406429 (+) True G2315818
TU2648735 lncRNA downstream 64777 29415641 ~ 29418492 (+) True G2315788
TU2648796 lncRNA downstream 110448 29461312 ~ 29461623 (+) True G2315844
TU2648889 lncRNA downstream 244674 29595538 ~ 29628782 (+) True G2315929
XM_021560362.2 mRNA upstream 126596 29215636 ~ 29223759 (+) False LOC110488226
XM_036970998.1 mRNA downstream 15563 29366427 ~ 29369552 (+) True LOC118946464
XR_002468369.2 mRNA downstream 18805 29369669 ~ 29376118 (+) True LOC110488231
XM_036970813.1 mRNA downstream 88049 29438913 ~ 29447508 (+) False LOC110488235
XM_036970812.1 mRNA downstream 88051 29438915 ~ 29447508 (+) False LOC110488235
XM_036970814.1 mRNA downstream 88052 29438916 ~ 29447508 (+) False LOC110488235
TU2647881 other upstream 646931 28698740 ~ 28703424 (+) True G2314987
TU2647771 other upstream 786760 28520255 ~ 28563595 (+) True G2314887
TU2646261 other upstream 1303021 28043955 ~ 28047334 (+) False kcng2
TU2646260 other upstream 1304438 28043955 ~ 28045917 (+) False kcng2
TU2649449 other downstream 571520 29922384 ~ 29930951 (+) False G2316421
TU2650483 other downstream 1467164 30818028 ~ 30819016 (+) True tmem79a
TU2650554 other downstream 1482866 30833730 ~ 30835101 (+) True G2317455
TU2650704 other downstream 1746755 31097619 ~ 31127687 (+) False G2317562
TU2650705 other downstream 1746755 31097619 ~ 31127687 (+) False G2317562

Expression Profile