RNA id: TU2648719


Basic Information

Item Value
RNA id TU2648719
length 1649
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G2315772
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 29393847 ~ 29395564 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGGCTCTGAAAGACTTACTTTATTGCATGTTAACAGAAATACCCATATCAATAGCACAGTCAAACACATTGTAAATAAACAGCAAACCAGACCTTTAGAACATCAACACATTCTCCAATGCTGCCCTCTAGTGAGGACAAGGCATCAGTGGACCATGCACAAATATTACAGTAACAGCAAAGTTAGTTCAGTGGTCAACAAGGGCTGGAATGACACAAAAACAAGTACTACAATGTCAGTTAGCTTTTGGTTAAAATGTCAAATGGACattcattttattatttttttagggCAGTCCAGAATATTCTTACTCTTTGAGTATTTTAGTATGTCTAGAATATTAGAGCATACGCAAGAGGCTCTTTTGCTTTGTTAGAGCAAATTGTTCAATAAAAAAACAagtaataaataaacaaataaagaaAGTAGATATTCAAACAAATGCAATACAAGTCAGGTTTCTTATGATGGAATCATAACACACACGGAAAAGGTTAGGCTATGGTAGGGATCAATTACGTATTCTGTGTGTTGATGTGGCATGTAACAGTATTTGCTTGCTTTTTTCTAATGTGTTCATCAGTGTTCATCTACAACTATTCTATATTCTAACATGATACAATCCTCTCAATGAGCACGACAATACATTGCCAGCATTGGTTGGTTAGCTTGGTAAGTGATTAGAGCTGTGAAATCATTCACTTTAAAATACATGAATGTGCAAAACTAGACTAAAAACAATGAACAGAATTATATTATGTAAAGCAAGAAGCATCATATTATGACACGGTAGTGATAAAGGCGTGTATTATTTGGTCTCAAAAAGTGTGATGCCACCAAAGAACAACAAAAGAAGCAATGAAAGTATACCTACATATAATTTTACATTAGCTTCAGTTAGTCCCTAGAATCCTCCAATCCATGCAGTGACAGTGTTAGAAACTAAGACcttgattagttgattatttgaaacTGCTGTATTAGTGTTGGgctagaacaaaagcctgcataccCTCCTCAGGATCAGAGATGTAGAACCCCTGTCCTATATGTTCATCCTTCACTTTCTGCATCCATGATAATACTTATAATCAGTCTCGTAGCTTTGCAAACATCCTCAAAATGAATAACATTGGTAACAATTGACATTTTCTTCCCATTTTATATAGCTTAATAATTACTGAGGCAATACAGGTTTGAGTGCCTTCATTTACGGCAAAACAGTTATATGTCATTCATGAGAATTTGTCCTGCCAGTCACCACACCATCTCCTTAGAAAGCTGAATTCCCAATGAACCCCTAgcccctataccctatacccctTGGCATtcctgtagatctgaaaggaTATGAAAGGTTTGAACAGTATGTAGGCCAAATGCTTCACCTTGCCTTTAGGTAGGCTGGGTGGAATTTCCACCACCTATCTAATCGTTTCAGATCTACAGAACTGTCTAGGGCTCGATTTGGAATTCAGATTAAGACCAACACTGTTGCGCATATAATCCGGCCCAAGTGGCTGGAGTGGAGGATGAAGGAGGTTTGGTTTAGGGCTCAGCCGCCTCGATGGGCTCCACCTGTGGGTCAGTGGGGGGAGTGGAGACCTCCTCTACCTGGTCGGAATCGGGTTCAGTGACAACAACGGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2648734 lncRNA upstream 42983 29350355 ~ 29350864 (+) True G2315787
TU2648733 lncRNA upstream 43831 29349460 ~ 29350016 (+) True G2315786
TU2648717 lncRNA upstream 65677 29326886 ~ 29328170 (+) True G2315770
TU2648666 lncRNA upstream 91889 29266542 ~ 29301958 (+) True G2315734
TU2648611 lncRNA upstream 122218 29213894 ~ 29271629 (+) True LOC110488225
TU2648769 lncRNA downstream 10511 29406075 ~ 29406429 (+) True G2315818
TU2648735 lncRNA downstream 20077 29415641 ~ 29418492 (+) True G2315788
TU2648796 lncRNA downstream 65748 29461312 ~ 29461623 (+) True G2315844
TU2648889 lncRNA downstream 199974 29595538 ~ 29628782 (+) True G2315929
TU2649272 lncRNA downstream 250618 29646182 ~ 29646446 (+) True G2316285
XR_002468369.2 mRNA upstream 17729 29369669 ~ 29376118 (+) True LOC110488231
XM_036970998.1 mRNA upstream 24295 29366427 ~ 29369552 (+) True LOC118946464
XM_021560362.2 mRNA upstream 170088 29215636 ~ 29223759 (+) False LOC110488226
XM_036970813.1 mRNA downstream 43349 29438913 ~ 29447508 (+) False LOC110488235
XM_036970812.1 mRNA downstream 43351 29438915 ~ 29447508 (+) False LOC110488235
XM_036970814.1 mRNA downstream 43352 29438916 ~ 29447508 (+) False LOC110488235
XM_021560377.2 mRNA downstream 43356 29438920 ~ 29447508 (+) True LOC110488235
XM_021560381.2 mRNA downstream 93313 29488877 ~ 29491478 (+) True LOC110488238
TU2647881 other upstream 690423 28698740 ~ 28703424 (+) True G2314987
TU2647771 other upstream 830252 28520255 ~ 28563595 (+) True G2314887
TU2646261 other upstream 1346513 28043955 ~ 28047334 (+) False kcng2
TU2646260 other upstream 1347930 28043955 ~ 28045917 (+) False kcng2
TU2649449 other downstream 526820 29922384 ~ 29930951 (+) False G2316421
TU2650483 other downstream 1422464 30818028 ~ 30819016 (+) True tmem79a
TU2650554 other downstream 1438166 30833730 ~ 30835101 (+) True G2317455
TU2650704 other downstream 1702055 31097619 ~ 31127687 (+) False G2317562
TU2650705 other downstream 1702055 31097619 ~ 31127687 (+) False G2317562

Expression Profile