RNA id: TU2649455


Basic Information

Item Value
RNA id TU2649455
length 210
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G2316423
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 29945567 ~ 29947714 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGATGATGGCACTGAAATCACGGCAAACGTGACGTATGTGTACAAAGAGGAAGACGTCAACCACCCTAGTGGTTTTCTACAGGAAGTCTTAAAAGTCTCAGGTCTCCTGACCACCACTGTtgccccaacaacaacaacaactaccaacACCACACCACTTCCTACCCTTTTGACttcagtgacatcaacaactagGTAAGCAAGATCATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2649452 lncRNA upstream 8630 29936255 ~ 29936937 (+) True G2316422
TU2649450 lncRNA upstream 14087 29923972 ~ 29931480 (+) True G2316421
TU2649444 lncRNA upstream 14616 29923972 ~ 29930951 (+) False G2316421
TU2649446 lncRNA upstream 14616 29923972 ~ 29930951 (+) False G2316421
TU2649334 lncRNA upstream 104586 29823621 ~ 29840981 (+) False LOC110489425
TU2649335 lncRNA downstream 4792 29952506 ~ 29953056 (+) False LOC110489425
TU2649336 lncRNA downstream 6521 29954235 ~ 29960981 (+) False LOC110489425
TU2649512 lncRNA downstream 104346 30052060 ~ 30055050 (+) True G2316478
TU2649513 lncRNA downstream 117176 30064890 ~ 30068961 (+) True G2316479
TU2649344 lncRNA downstream 164617 30112331 ~ 30119439 (+) True LOC110489425
XM_036971688.1 mRNA upstream 154006 29790669 ~ 29791561 (+) True LOC110488250
LOC110489422 mRNA upstream 199982 29730204 ~ 29745585 (+) True LOC110489422
XM_021560396.2 mRNA upstream 265372 29672909 ~ 29680195 (+) False LOC110488243
XR_002468371.2 mRNA upstream 265372 29672910 ~ 29680195 (+) True LOC110488243
LOC110489421 mRNA upstream 288496 29655911 ~ 29657071 (+) True LOC110489421
XM_036970999.1 mRNA downstream 74341 30022055 ~ 30027657 (+) True LOC118946465
XM_036971564.1 mRNA downstream 83893 30031607 ~ 30032059 (+) True LOC118946498
XM_036971699.1 mRNA downstream 129436 30077150 ~ 30077764 (+) True LOC118946528
XM_036971565.1 mRNA downstream 151987 30099701 ~ 30100390 (+) True LOC118946499
XM_036971000.1 mRNA downstream 160502 30108216 ~ 30125310 (+) False LOC110489425
TU2649449 other upstream 14616 29922384 ~ 29930951 (+) False G2316421
TU2647881 other upstream 1242143 28698740 ~ 28703424 (+) True G2314987
TU2647771 other upstream 1381972 28520255 ~ 28563595 (+) True G2314887
TU2646261 other upstream 1898233 28043955 ~ 28047334 (+) False kcng2
TU2650483 other downstream 870314 30818028 ~ 30819016 (+) True tmem79a
TU2650554 other downstream 886016 30833730 ~ 30835101 (+) True G2317455
TU2650704 other downstream 1149905 31097619 ~ 31127687 (+) False G2317562
TU2650705 other downstream 1149905 31097619 ~ 31127687 (+) False G2317562
TU2650702 other downstream 1173374 31121088 ~ 31127687 (+) True G2317562

Expression Profile