RNA id: TU2649512


Basic Information

Item Value
RNA id TU2649512
length 336
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G2316478
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 30052060 ~ 30055050 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacaacaacagcacctacatcAACTGTAGTTCCCATGACAACTGTAGCTCCAataacagctttagcatctacgacaaccactgcagacctaacaacaacaactgctgctcctacgaccactacagctccagaacctattacgacaaccactgcagctcctgctacaacaactaaaacttcagctcctacgacaaccacaaccacaacaacagcacctccaacaactgtagctcccacaacaactgcagctcctacaacagctttagcatctacaacaacaactgcagcagctcctgctacaacaactacaacaactacaacttcagctcctacgac

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2649451 lncRNA upstream 54751 29934770 ~ 29997309 (+) False G2316422
TU2649336 lncRNA upstream 91079 29954235 ~ 29960981 (+) False LOC110489425
TU2649335 lncRNA upstream 99004 29952506 ~ 29953056 (+) False LOC110489425
TU2649455 lncRNA upstream 104346 29945567 ~ 29947714 (+) False G2316423
TU2649456 lncRNA upstream 104346 29947331 ~ 29947714 (+) True G2316423
TU2649513 lncRNA downstream 9840 30064890 ~ 30068961 (+) True G2316479
TU2649344 lncRNA downstream 57281 30112331 ~ 30119439 (+) True LOC110489425
TU2649795 lncRNA downstream 87777 30142827 ~ 30143131 (+) True G2316748
TU2649799 lncRNA downstream 88551 30143601 ~ 30143938 (+) True G2316752
TU2649959 lncRNA downstream 194245 30249295 ~ 30249553 (+) True G2316904
XM_036971564.1 mRNA upstream 20001 30031607 ~ 30032059 (+) True LOC118946498
XM_036970999.1 mRNA upstream 24403 30022055 ~ 30027657 (+) True LOC118946465
XM_036971688.1 mRNA upstream 260499 29790669 ~ 29791561 (+) True LOC110488250
LOC110489422 mRNA upstream 306475 29730204 ~ 29745585 (+) True LOC110489422
XM_021560396.2 mRNA upstream 371865 29672909 ~ 29680195 (+) False LOC110488243
XM_036971699.1 mRNA downstream 22100 30077150 ~ 30077764 (+) True LOC118946528
XM_036971565.1 mRNA downstream 44651 30099701 ~ 30100390 (+) True LOC118946499
XM_036971000.1 mRNA downstream 53166 30108216 ~ 30125310 (+) False LOC110489425
XM_021560400.2 mRNA downstream 123574 30178624 ~ 30183914 (+) True LOC110488251
XM_036971349.1 mRNA downstream 136425 30191475 ~ 30224642 (+) False LOC110488252
TU2649449 other upstream 121109 29922384 ~ 29930951 (+) False G2316421
TU2647881 other upstream 1348636 28698740 ~ 28703424 (+) True G2314987
TU2647771 other upstream 1488465 28520255 ~ 28563595 (+) True G2314887
TU2646261 other upstream 2004726 28043955 ~ 28047334 (+) False kcng2
TU2650483 other downstream 762978 30818028 ~ 30819016 (+) True tmem79a
TU2650554 other downstream 778680 30833730 ~ 30835101 (+) True G2317455
TU2650704 other downstream 1042569 31097619 ~ 31127687 (+) False G2317562
TU2650705 other downstream 1042569 31097619 ~ 31127687 (+) False G2317562
TU2650702 other downstream 1066038 31121088 ~ 31127687 (+) True G2317562

Expression Profile