RNA id: TU2649513


Basic Information

Item Value
RNA id TU2649513
length 445
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G2316479
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 30064890 ~ 30068961 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caacaacagcacctacaacaactgtagctgccacgacaactgcagctcctgcaacagtattagcatctacgacaaccactgcagccctaacaacaacaactgctgctcctacgagcactacagctccagaacctattacgacaaccactgcagctcctgctacaacaactacaacaactacaacttcagcacctacgacaaccacaacaacagcacctccaacaactgtagctcccaagataactgcagctcctacaacagctttagcatctacaacaaccactgcagccctaaccacaacaactgctgctcctacgaccactgtaactccacaacctactacgacaaccagtgcagctcctactacaacaactgctgttctaacgaccacagtgactgcagcaccttctacaataactacaacttcagcacctacgacaaccac

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2649512 lncRNA upstream 9840 30052060 ~ 30055050 (+) True G2316478
TU2649451 lncRNA upstream 67581 29934770 ~ 29997309 (+) False G2316422
TU2649336 lncRNA upstream 103909 29954235 ~ 29960981 (+) False LOC110489425
TU2649335 lncRNA upstream 111834 29952506 ~ 29953056 (+) False LOC110489425
TU2649455 lncRNA upstream 117176 29945567 ~ 29947714 (+) False G2316423
TU2649344 lncRNA downstream 43370 30112331 ~ 30119439 (+) True LOC110489425
TU2649795 lncRNA downstream 73866 30142827 ~ 30143131 (+) True G2316748
TU2649799 lncRNA downstream 74640 30143601 ~ 30143938 (+) True G2316752
TU2649959 lncRNA downstream 180334 30249295 ~ 30249553 (+) True G2316904
TU2649964 lncRNA downstream 183884 30252845 ~ 30253189 (+) True G2316909
XM_036971564.1 mRNA upstream 32831 30031607 ~ 30032059 (+) True LOC118946498
XM_036970999.1 mRNA upstream 37233 30022055 ~ 30027657 (+) True LOC118946465
XM_036971688.1 mRNA upstream 273329 29790669 ~ 29791561 (+) True LOC110488250
LOC110489422 mRNA upstream 319305 29730204 ~ 29745585 (+) True LOC110489422
XR_002468371.2 mRNA upstream 384695 29672910 ~ 29680195 (+) True LOC110488243
XM_036971699.1 mRNA downstream 8189 30077150 ~ 30077764 (+) True LOC118946528
XM_036971565.1 mRNA downstream 30740 30099701 ~ 30100390 (+) True LOC118946499
XM_036971000.1 mRNA downstream 39255 30108216 ~ 30125310 (+) False LOC110489425
XM_021560400.2 mRNA downstream 109663 30178624 ~ 30183914 (+) True LOC110488251
XM_036971349.1 mRNA downstream 122514 30191475 ~ 30224642 (+) False LOC110488252
TU2649449 other upstream 133939 29922384 ~ 29930951 (+) False G2316421
TU2647881 other upstream 1361466 28698740 ~ 28703424 (+) True G2314987
TU2647771 other upstream 1501295 28520255 ~ 28563595 (+) True G2314887
TU2646261 other upstream 2017556 28043955 ~ 28047334 (+) False kcng2
TU2650483 other downstream 749067 30818028 ~ 30819016 (+) True tmem79a
TU2650554 other downstream 764769 30833730 ~ 30835101 (+) True G2317455
TU2650704 other downstream 1028658 31097619 ~ 31127687 (+) False G2317562
TU2650705 other downstream 1028658 31097619 ~ 31127687 (+) False G2317562
TU2650702 other downstream 1052127 31121088 ~ 31127687 (+) True G2317562

Expression Profile