RNA id: TU2650737


Basic Information

Item Value
RNA id TU2650737
length 1782
lncRNA type antisense_over
GC content 0.44
exon number 9
gene id G2317594
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 31066321 ~ 31077186 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAATCCCAAATGAAGAATTTCTCAAGGGATAATCGTGAGGACGAAACGGTTAGGGTAATAGGGGGTAACTAGCCCACACTAAGAACAATTTCTAATTGCTGACACAAAAAAGCAATGTTTGGAGAAAAATTGGCTCGGCCTATGGGCAAGACATCTTCATCTCGTAAAGGTTGCTCAACGGACTCAAAGTGATGATGCCCTTCAAATTGAGTGAAACTAAAATGCCAGGCCCCCTGCTACTTCTTCTGTGCTGGAGCTATGTCTTGAAAGCTACACACGCATCAATTATAACCCAGACACCTGGAGTGGTGATGGTGAAAGCTGGTGATACAGTGACCTTGAAATGCCATTTGAGTGAGATTATCACCTACTGCTTCTCTGTGAGTTGGATAAAAGTGGACCCCAGGACTGGAACACACAGCATGAGTACACCCTTAACGGTTGATAACATTTCAACGGACCAGGAACAGGACAACCTATGTTCCGTCACAATCACCAATGCAAATagagagaaagggtaggGAACAGCACTAAAGCCCCAACCATCCAAATCGTCTCTTCGCCAGAGGTTGACCGCATCTTCATCCCTCTGCTGTGTTTGGTGTTGGAAGTGGTCCCGTCTCAGGTCCGTGTGTTCTGGCTCATAGACGGGAGAGAAGAGAGTGGACTCACTGACTCCACCTGGACAGACAACAGTGATTCAGCCACAGAGTTCACTAGGAACCAGATTATTGTCCAGGCACAGGAGTGGGACAGACGAGCAGAGTTTACATGTGTGGTGGAGTTTGAGGGGAAAAATATCACCAAAACACTGCTGCAGAAAAATGATTCCAATGCCATGTGCACAATGTTGATGTATGGGGCCTCTGCAGCTGCTCTCCTCACACTAATAGTTGCTGTCACTATCGCTGTGTGTCTGCACCGTGGGCATCCTGTGGTTATTGATGCAGATACAAGACAAAGAGGCACAGGCACTGAGAACAGATGGGATCAATCtgGGACACGTGGAGAAGCAAGAAGGCCAGTTAGATCATCGTTCTCGGAGGTCCAGTATGCGACTTTGGACCATATCAATTTTGGGAGACGCACAAATACCGTTCTCCAATCAGATTTTGACAAAGAAATTGCATAACAATTCCTTGTATTTTGTCATGATGTAGATGCTTATGAACTGCCACTGAAAACATTTCAGATGATTATTTATGTATAAAGCAAGAGCCGGTGTCCGCAATTGCAAAGTACTTTCTTTGATATTGGAATTCAACTGTGGAGTAGTCTCCCATTAGTCATTAAGCTGTCCCAGTCCAGAAAGACTTTCAGAGGTCAGGTTAGATCCCTTCCGTCGGAAAAAGTGCACAGGTCTAAATAGGAAAATTACTGAATATTCTTGAATTTTGTAtggattgtgtatttattatggtGTAGGCCAGTTAGGGACTTATCATAGGCCCATGTCACAGGAGGtaggtggcaccttaattggggaggatgggctcgtggtattggctggagtggaatagtatgaaatacatcaaacacatggattgATGCCAATCCATCTGCtttgttccagacattattatcagccgttctcccctcagcagcctccactggcccGTGTATTTCCATGGATGTTCTTGTGTTGTGTCCTGTTTTTGTCCTACACAGAAGACCACATTGGAAATAAGTGTTCTTACACTGTTGTGTGTCATCCTCTGGGATTCTTTGTACTTTTAAAACTGTAAGAAATGTAttatccaaaatcaaatcaatcaatcaat

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2650697 lncRNA upstream 65257 30997945 ~ 31001064 (+) True G2317557
TU2650670 lncRNA upstream 95942 30970061 ~ 30970379 (+) True G2317533
TU2650617 lncRNA upstream 117825 30936389 ~ 30948496 (+) False G2317509
TU2650620 lncRNA upstream 126910 30936389 ~ 30939411 (+) False G2317509
TU2650622 lncRNA upstream 126910 30936389 ~ 30939411 (+) True G2317509
TU2650738 lncRNA downstream 983 31078169 ~ 31078564 (+) True G2317595
TU2650753 lncRNA downstream 14250 31091436 ~ 31091672 (+) True G2317610
TU2650757 lncRNA downstream 17659 31094845 ~ 31095086 (+) True G2317614
TU2650785 lncRNA downstream 71877 31149063 ~ 31149263 (+) True G2317638
TU2650786 lncRNA downstream 72419 31149605 ~ 31149856 (+) True G2317639
XR_005041319.1 mRNA upstream 168349 30888810 ~ 30897972 (+) False LOC118946481
XM_021560411.2 mRNA upstream 243766 30817937 ~ 30822555 (+) False tmem79a
XM_021562151.2 mRNA upstream 327936 30735898 ~ 30738385 (+) True LOC110489445
XM_021560403.2 mRNA upstream 521327 30509313 ~ 30544994 (+) True LOC110488253
XM_036971350.1 mRNA upstream 841679 30202912 ~ 30224642 (+) True LOC110488252
XM_036970975.1 mRNA downstream 20365 31097551 ~ 31103860 (+) True LOC110488270
XM_021560426.2 mRNA downstream 43728 31120914 ~ 31127679 (+) True LOC110488269
XM_021560423.2 mRNA downstream 66354 31143540 ~ 31146770 (+) False LOC110488267
XM_021560424.2 mRNA downstream 66379 31143565 ~ 31146770 (+) True LOC110488267
LOC110488268 mRNA downstream 68898 31146084 ~ 31155830 (+) True LOC110488268
TU2650554 other upstream 231220 30833730 ~ 30835101 (+) True G2317455
TU2650483 other upstream 247305 30818028 ~ 30819016 (+) True tmem79a
TU2649449 other upstream 1135370 29922384 ~ 29930951 (+) False G2316421
TU2647881 other upstream 2362897 28698740 ~ 28703424 (+) True G2314987
TU2647771 other upstream 2502726 28520255 ~ 28563595 (+) True G2314887
TU2650704 other downstream 20433 31097619 ~ 31127687 (+) False G2317562
TU2650705 other downstream 20433 31097619 ~ 31127687 (+) False G2317562
TU2650702 other downstream 43902 31121088 ~ 31127687 (+) True G2317562
TU2650838 other downstream 144931 31222117 ~ 31223562 (+) True G2317685
TU2650902 other downstream 257633 31334819 ~ 31340531 (+) True LOC110488286

Expression Profile