RNA id: TCONS_00059079


Basic Information

Item Value
RNA id TCONS_00059079
length 569
lncRNA type retained_intron
GC content 0.44
exon number 4
gene id XLOC_030211
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 32882688 ~ 32887020 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGTTTgcccattttcttttcggttgtAGCATAATTATTATGGCTTGCATTTTTTTAACTGACCTTTGTAAGATGCTGTGCTGTTTTCAGTTGCTGTAAATGATACACGATGCTAAATAGTTTAAGTTCTCTCTTCGCTAATGTCACACAGCAGTCAACACAATCTTAAGAACATTGTGAGTTTAGTTGTTAATGAGGCTAGTTGTCTCTCTACAtttcttaatttagtttttttctttttagtgttCATGAGATGCACTGGTGGAGAGGTCGGTGCCACTTCCTCGCTGGCCCCCAAAATTGGACCTTTGGGTCTTTCCCCTAAAAAGGTGGGTGATGACATCGCAAAGGCCACCGGTGACTGGAAGGGCCTGAGAATCACTGTGAAGCTGACCATCCAGAACAGACAAGCAGCGATTGAGGTAGTGCCATCAGCCTCTGCCCTCATTATCAAGGCTCTGAAGGAACCTCCCCGTGACAGGAAGAAGGTCAAGAACATCAAGCACTCTGGAAGTGTTGCTTTTGATGAGATCGTCAACATTGCCCGCGTCATGAGGCACAGATCAATT

Function

GO:

id name namespace
GO:0000027 ribosomal large subunit assembly biological_process
GO:0006412 translation biological_process
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function
GO:0070180 large ribosomal subunit rRNA binding molecular_function

KEGG:

id description
ko03010 Ribosome
ko05171 Coronavirus disease - COVID-19
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-030131-5297 Predicted to enable large ribosomal subunit rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; eye; intestine; liver; and pancreas. Human ortholog(s) of this gene implicated in systemic lupus erythematosus. Orthologous to human RPL12 (ribosomal protein L12).

Ensembl:

ensembl_id ENSDART00000144695

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00059073 lncRNA upstream 27497 32850839 ~ 32856096 (+) False XLOC_030210
TCONS_00061733 lncRNA upstream 516112 32358880 ~ 32367481 (+) True XLOC_030206
TCONS_00059058 lncRNA upstream 619533 32260163 ~ 32264060 (+) True XLOC_030204
TCONS_00061732 lncRNA upstream 620373 32260163 ~ 32263220 (+) False XLOC_030204
TCONS_00061731 lncRNA upstream 797016 32083729 ~ 32086577 (+) True XLOC_030198
TCONS_00059086 lncRNA downstream 42426 32928834 ~ 32932768 (+) False XLOC_030215
TCONS_00059092 lncRNA downstream 394755 33281163 ~ 33282835 (+) False XLOC_030218
TCONS_00061734 lncRNA downstream 394755 33281163 ~ 33282875 (+) False XLOC_030218
TCONS_00061735 lncRNA downstream 446041 33332449 ~ 33338469 (+) False XLOC_030221
TCONS_00059098 lncRNA downstream 446140 33332548 ~ 33338466 (+) False XLOC_030221
TCONS_00059068 mRNA upstream 23893 32831561 ~ 32859700 (+) False XLOC_030210
TCONS_00059067 mRNA upstream 23893 32831561 ~ 32859700 (+) False XLOC_030210
TCONS_00059070 mRNA upstream 23893 32835219 ~ 32859700 (+) False XLOC_030210
TCONS_00059069 mRNA upstream 24874 32835219 ~ 32858719 (+) False XLOC_030210
TCONS_00059071 mRNA upstream 30765 32845759 ~ 32852828 (+) False XLOC_030210
TCONS_00059083 mRNA downstream 27913 32914321 ~ 32920149 (+) True XLOC_030214
TCONS_00059084 mRNA downstream 38261 32924669 ~ 32946255 (+) False XLOC_030215
TCONS_00059087 mRNA downstream 45949 32932357 ~ 32962023 (+) True XLOC_030215
TCONS_00059089 mRNA downstream 180875 33067283 ~ 33104366 (+) False XLOC_030217
TCONS_00059090 mRNA downstream 184200 33070608 ~ 33104045 (+) True XLOC_030217
TCONS_00059074 other upstream 24339 32858428 ~ 32859254 (+) True XLOC_030210
TCONS_00059063 other upstream 245828 32637648 ~ 32637765 (+) True XLOC_030208
TCONS_00059060 other upstream 537462 32345189 ~ 32346131 (+) True XLOC_030205
TCONS_00059050 other upstream 700865 32178630 ~ 32182728 (+) True XLOC_030200
TCONS_00059033 other upstream 938871 31944607 ~ 31944722 (+) False XLOC_030193
TCONS_00059082 other downstream 64 32886472 ~ 32886598 (+) True XLOC_030213
TCONS_00059085 other downstream 38510 32924918 ~ 32932768 (+) False XLOC_030215
TCONS_00059088 other downstream 107378 32993786 ~ 32993891 (+) True XLOC_030216
TCONS_00059093 other downstream 395853 33282261 ~ 33282875 (+) True XLOC_030218
TCONS_00059114 other downstream 2033987 34920395 ~ 34921911 (+) True XLOC_030237

Expression Profile

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