RNA id: TU2650785


Basic Information

Item Value
RNA id TU2650785
length 201
lncRNA type intronic
GC content 0.33
exon number 1
gene id G2317638
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 31149063 ~ 31149263 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataaaactgtatttttttgtgaacaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaaacttttataacaaatcaaaaactgaaaaattgggcgtgcaaaattattcagcccccttaagttaatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2650757 lncRNA upstream 53977 31094845 ~ 31095086 (+) True G2317614
TU2650753 lncRNA upstream 57391 31091436 ~ 31091672 (+) True G2317610
TU2650738 lncRNA upstream 70499 31078169 ~ 31078564 (+) True G2317595
TU2650737 lncRNA upstream 71877 31066321 ~ 31077186 (+) True G2317594
TU2650697 lncRNA upstream 147999 30997945 ~ 31001064 (+) True G2317557
TU2650786 lncRNA downstream 342 31149605 ~ 31149856 (+) True G2317639
TU2650787 lncRNA downstream 2487 31151750 ~ 31151964 (+) True G2317640
TU2650789 lncRNA downstream 6902 31156165 ~ 31156364 (+) True G2317642
TU2650819 lncRNA downstream 60439 31209702 ~ 31209911 (+) True G2317670
TU2650821 lncRNA downstream 61691 31210954 ~ 31211199 (+) True G2317672
XM_021560423.2 mRNA upstream 2293 31143540 ~ 31146770 (+) False LOC110488267
XM_021560424.2 mRNA upstream 2293 31143565 ~ 31146770 (+) True LOC110488267
XM_021560426.2 mRNA upstream 21384 31120914 ~ 31127679 (+) True LOC110488269
XM_036970975.1 mRNA upstream 45203 31097551 ~ 31103860 (+) True LOC110488270
XR_005041319.1 mRNA upstream 251091 30888810 ~ 30897972 (+) False LOC118946481
XM_036971543.1 mRNA downstream 7962 31157225 ~ 31173468 (+) False LOC110488271
XM_036971544.1 mRNA downstream 8453 31157716 ~ 31173468 (+) False LOC110488271
XM_036971542.1 mRNA downstream 8454 31157717 ~ 31173468 (+) False LOC110488271
XM_021560428.2 mRNA downstream 8455 31157718 ~ 31173468 (+) False LOC110488271
XM_021560431.2 mRNA downstream 8455 31157718 ~ 31173468 (+) True LOC110488271
TU2650704 other upstream 21376 31097619 ~ 31127687 (+) False G2317562
TU2650705 other upstream 21376 31097619 ~ 31127687 (+) False G2317562
TU2650702 other upstream 21376 31121088 ~ 31127687 (+) True G2317562
TU2650554 other upstream 313962 30833730 ~ 30835101 (+) True G2317455
TU2650483 other upstream 330047 30818028 ~ 30819016 (+) True tmem79a
TU2650838 other downstream 72854 31222117 ~ 31223562 (+) True G2317685
TU2650902 other downstream 185556 31334819 ~ 31340531 (+) True LOC110488286
TU2650828 other downstream 467911 31617174 ~ 31621137 (+) True LOC118946484
TU2652044 other downstream 785620 31934883 ~ 31941550 (+) False LOC110488305
TU2652039 other downstream 785651 31934914 ~ 31941550 (+) False LOC110488305

Expression Profile