RNA id: TU2650789


Basic Information

Item Value
RNA id TU2650789
length 200
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G2317642
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 31156165 ~ 31156364 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCTATAATAATTTCACCATCCGTAAGCCAAAGACTTTGTTCATGCTTACACATTTTATGTAATTGATTACATTTGGCATGCATGTCATTTATCCCGTATTACAGGGGacaccaaaaggttgctggaatTAAGATTTTAGTTGTGCGTTATGTTAATAGACGTGTCTTGTGTTTCTAGGAGTTTAATCACAAAATTATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2650787 lncRNA upstream 4201 31151750 ~ 31151964 (+) True G2317640
TU2650786 lncRNA upstream 6309 31149605 ~ 31149856 (+) True G2317639
TU2650785 lncRNA upstream 6902 31149063 ~ 31149263 (+) True G2317638
TU2650757 lncRNA upstream 61079 31094845 ~ 31095086 (+) True G2317614
TU2650753 lncRNA upstream 64493 31091436 ~ 31091672 (+) True G2317610
TU2650819 lncRNA downstream 53338 31209702 ~ 31209911 (+) True G2317670
TU2650821 lncRNA downstream 54590 31210954 ~ 31211199 (+) True G2317672
TU2650848 lncRNA downstream 78623 31234987 ~ 31241473 (+) False G2317695
TU2650849 lncRNA downstream 78623 31234987 ~ 31308758 (+) False G2317695
TU2650850 lncRNA downstream 78623 31234987 ~ 31241473 (+) True G2317695
LOC110488268 mRNA upstream 335 31146084 ~ 31155830 (+) True LOC110488268
XM_021560423.2 mRNA upstream 9395 31143540 ~ 31146770 (+) False LOC110488267
XM_021560424.2 mRNA upstream 9395 31143565 ~ 31146770 (+) True LOC110488267
XM_021560426.2 mRNA upstream 28486 31120914 ~ 31127679 (+) True LOC110488269
XM_036970975.1 mRNA upstream 52305 31097551 ~ 31103860 (+) True LOC110488270
XM_036971543.1 mRNA downstream 861 31157225 ~ 31173468 (+) False LOC110488271
XM_036971544.1 mRNA downstream 1352 31157716 ~ 31173468 (+) False LOC110488271
XM_036971542.1 mRNA downstream 1353 31157717 ~ 31173468 (+) False LOC110488271
XM_021560428.2 mRNA downstream 1354 31157718 ~ 31173468 (+) False LOC110488271
XM_021560431.2 mRNA downstream 1354 31157718 ~ 31173468 (+) True LOC110488271
TU2650704 other upstream 28478 31097619 ~ 31127687 (+) False G2317562
TU2650705 other upstream 28478 31097619 ~ 31127687 (+) False G2317562
TU2650702 other upstream 28478 31121088 ~ 31127687 (+) True G2317562
TU2650554 other upstream 321064 30833730 ~ 30835101 (+) True G2317455
TU2650483 other upstream 337149 30818028 ~ 30819016 (+) True tmem79a
TU2650838 other downstream 65753 31222117 ~ 31223562 (+) True G2317685
TU2650902 other downstream 178455 31334819 ~ 31340531 (+) True LOC110488286
TU2650828 other downstream 460810 31617174 ~ 31621137 (+) True LOC118946484
TU2652044 other downstream 778519 31934883 ~ 31941550 (+) False LOC110488305
TU2652039 other downstream 778550 31934914 ~ 31941550 (+) False LOC110488305

Expression Profile