RNA id: TU2651039


Basic Information

Item Value
RNA id TU2651039
length 211
lncRNA type intronic
GC content 0.49
exon number 1
gene id G2317867
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 31529060 ~ 31529270 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggaccttgaaatgcttcttacgaagccactccttcgttgcccgggcggtgtgtttgggatcattgtcatgctgaaagacccagccacgtttcatcttcaatgcccttgctgatggaaggaggttcactcaaaatctcacgatacatggccccattcattctttcctttacacggatcagtcatcctgatccctttgcagaaaaacagcccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2651038 lncRNA upstream 1312 31527399 ~ 31527748 (+) True G2317866
TU2650834 lncRNA upstream 6377 31522250 ~ 31522683 (+) True LOC110488276
TU2650921 lncRNA upstream 216240 31312421 ~ 31312820 (+) True G2317754
TU2650853 lncRNA upstream 286551 31241724 ~ 31242509 (+) False G2317696
TU2650855 lncRNA upstream 286551 31241724 ~ 31242509 (+) True G2317696
TU2651040 lncRNA downstream 371 31529641 ~ 31529939 (+) True G2317868
TU2651041 lncRNA downstream 2475 31531745 ~ 31531963 (+) True G2317869
TU2651042 lncRNA downstream 13560 31542830 ~ 31543056 (+) True G2317870
TU2651046 lncRNA downstream 16916 31546186 ~ 31546399 (+) True G2317874
TU2651049 lncRNA downstream 19428 31548698 ~ 31548913 (+) True G2317877
XM_036971856.1 mRNA upstream 11276 31497450 ~ 31517784 (+) False LOC110488278
XM_036971857.1 mRNA upstream 11276 31497450 ~ 31517784 (+) False LOC110488278
XM_036971858.1 mRNA upstream 11276 31497450 ~ 31517784 (+) False LOC110488278
XM_036971859.1 mRNA upstream 11276 31497450 ~ 31517784 (+) True LOC110488278
XM_036970964.1 mRNA upstream 43326 31371668 ~ 31485734 (+) True LOC110488277
XM_021560448.2 mRNA downstream 27210 31556480 ~ 31578762 (+) False LOC110488283
XM_036971463.1 mRNA downstream 27211 31556481 ~ 31578762 (+) True LOC110488283
XM_021560447.2 mRNA downstream 49737 31579007 ~ 31592755 (+) True LOC110488282
XM_021560449.2 mRNA downstream 63688 31592958 ~ 31598248 (+) False glmp
XM_021560450.2 mRNA downstream 63720 31592990 ~ 31598248 (+) True glmp
TU2650902 other upstream 188529 31334819 ~ 31340531 (+) True LOC110488286
TU2650838 other upstream 305498 31222117 ~ 31223562 (+) True G2317685
TU2650704 other upstream 401373 31097619 ~ 31127687 (+) False G2317562
TU2650828 other downstream 87904 31617174 ~ 31621137 (+) True LOC118946484
TU2652044 other downstream 405613 31934883 ~ 31941550 (+) False LOC110488305
TU2652039 other downstream 405644 31934914 ~ 31941550 (+) False LOC110488305
TU2652047 other downstream 405644 31934914 ~ 31941856 (+) False LOC110488305
TU2652037 other downstream 405693 31934963 ~ 31941550 (+) False LOC110488305

Expression Profile