RNA id: TU2651945



Basic Information


Item Value
RNA id TU2651945
length 220
lncRNA type antisense_over
GC content 0.50
exon number 1
gene id G2318685
representative True

Chromosome Information


Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 31739502 ~ 31739721 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGTTTCAGTTTTTAACAAAAGAAAACTTCAAATGCATTTTCAGCTAAAATCAACACCTGCAGTAAGAACTTCCCACTGAGGCCTACACACCCCAGGCCCAGTGCAGCCTCCCTGCCTGACTCCTTCACTCTCCCTGGGAAGAAGGACTCACTATATTCCCAGGCTGCTTGCAGCGGAGCAGGGTGAACCTGCTGTGGTTCTTCTTACTGCGGCTCTTGGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2651944 lncRNA upstream 31 31739079 ~ 31739471 (+) True G2318684
TU2651943 lncRNA upstream 472 31738732 ~ 31739030 (+) True G2318683
TU2651940 lncRNA upstream 2730 31736482 ~ 31736772 (+) True G2318680
TU2651935 lncRNA upstream 11028 31725845 ~ 31728474 (+) True G2318678
TU2651931 lncRNA upstream 12531 31723824 ~ 31726971 (+) False G2318678
TU2651948 lncRNA downstream 1747 31741468 ~ 31742006 (+) True G2318688
TU2651979 lncRNA downstream 40712 31780433 ~ 31781973 (+) True G2318718
TU2651984 lncRNA downstream 67609 31807330 ~ 31808684 (+) True G2318723
TU2651993 lncRNA downstream 69164 31808885 ~ 31808976 (+) True G2318732
TU2651989 lncRNA downstream 69442 31809163 ~ 31858408 (+) True G2318728
XM_021560455.2 mRNA upstream 27986 31700650 ~ 31711516 (+) True LOC110488287
XM_036971248.1 mRNA upstream 118363 31617119 ~ 31621139 (+) False LOC118946484
XM_036971247.1 mRNA upstream 118363 31617141 ~ 31621139 (+) False LOC118946484
XM_036971249.1 mRNA upstream 118363 31617141 ~ 31621139 (+) False LOC118946484
XM_021560450.2 mRNA upstream 141254 31592990 ~ 31598248 (+) True glmp
XM_021560467.2 mRNA downstream 75106 31814827 ~ 31826946 (+) False LOC110488296
XM_021560470.2 mRNA downstream 75106 31814827 ~ 31826946 (+) False LOC110488296
XM_036971225.1 mRNA downstream 75106 31814827 ~ 31826946 (+) False LOC110488296
XM_036971227.1 mRNA downstream 75121 31814842 ~ 31826946 (+) True LOC110488296
XM_021560472.2 mRNA downstream 88467 31828188 ~ 31855884 (+) True LOC110488297
TU2650828 other upstream 118365 31617174 ~ 31621137 (+) True LOC118946484
TU2650902 other upstream 398971 31334819 ~ 31340531 (+) True LOC110488286
TU2650838 other upstream 515940 31222117 ~ 31223562 (+) True G2317685
TU2650705 other upstream 611815 31097619 ~ 31127687 (+) False G2317562
TU2652044 other downstream 195162 31934883 ~ 31941550 (+) False LOC110488305
TU2652039 other downstream 195193 31934914 ~ 31941550 (+) False LOC110488305
TU2652047 other downstream 195193 31934914 ~ 31941856 (+) False LOC110488305
TU2652037 other downstream 195242 31934963 ~ 31941550 (+) False LOC110488305
TU2652038 other downstream 195242 31934963 ~ 31941856 (+) False LOC110488305

Expression Profile