RNA id: TU2652769


Basic Information

Item Value
RNA id TU2652769
length 2657
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G2319419
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 32459218 ~ 32461907 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAGACTTACATTCTGCTACATCTTTATTTTTAGCTGAAACAACTGTTACATAGAAAATAGGAGACAGAATTCAGGAACTGAACAATTATCTTAGAACGCCAGTGGCACAGAAAGAGGTCAACTCTGTCCAAATATGTCTCTAGGTCAACAACAGACTTGCAAGGCTAGAGTACTAAAGTGTATGTCAATCTATCCCAATCTGCGTCCCAATGCTCCTTCCTTTCATTGCCTCTTTTCCCTCGTGTCAATGAACTTCAAGATGAACAGTTTACATCATATATATGACAGGTAAAAGTAATAAGTAGACCAAGACCTCTTGCATCTGGCCATGAAGGAAAGGAAACTGTTGCAGACCATTGGGACAACACCTTGTATTTACAAGGAGTGAGTCTTTTACCATGACCAAAAACAAACATAttactttttttaaccatttagcAACGTATCGCTACATCAACGGgggaactacagtatattacatggACTATCAGACCATTGTATAGAATAATTGAGTCAGGGGCTATACAGGATTTTTAGCATATTGTTGCATCGGCCACACTTTAGTTTCCCCTGTTACCTATCTTTAGTTTCCCCTGTCTTGAATGGAATAATAGTCAGGCTTCAGTCGTTATGCAGAAagtccaactgctcttaaatgggGGAAATGTGTTGGGATAAATAGGTTCAGTATAAAAACGAGCTTTGACACTTAagagtaaaaaatgtaaaataacatGCATTACTCTATTTAGTTTAATGGGTTGTCTTGAAATTATGTTTGACAATACCCCTGTGCTACAGCTTACACACCACTAACTAAAGTATGGCGTTCGTGAAAAATAGTGGGAAAAATAACGTTTTGGATGTCTACACATTAGGCCATGTCATCTTGTGAAATACTTTAGGTAGTCGCAAAAGTGAATTCTGACTTCATTCAGCTGACGGTGCTGAACACAAGCTAACACAAACTCGACTTTGTAACCTTtccaactcttttttttttttacatttactaaTACGATTAGTTTATTGTGATCGAATGAGTTGTAGTTACCAGTGATCACCACTAGAATAGCTTTCACAGAGTACTAGTATTTTCACAGCAGGACGAGCACTTTTTACGTTTTCCATTTACATTTGCGTATGAATCCTCTGTATGACATTTAGCACAGCATCACTTATATTGAAATAAATGATCAATCTCTCCGTAATGGGAACTTTCTTCTCTAATTATAGAGAAAAACATGAAATTAAAGACATTCTATAGCCACCAATCAATGAGTGCTTCCACTGACACCTGAGTTGCATTCAAGGTAGAAACCTGTGCAACATATTACTATTGACAAATGATGTCACACCCGTTGACAACCACTGAGTAGATTAAGGATTGCAGGTCCTTGTGTCCTTTGTTGACTAAGAAGCTTCCTATTGATAGTGGGATGTATTTAAACGTATTTGTTCTCATTCTTTTTGGAGTCTAATTTATTGGTGTGCAATTAATTGCGGTAGAACATGCACATTTATACATTTGTCATTGGTAATAGAAAATAGCAAATATTTGATCTATTACAGAAAAGTAAAATACCGCTTTCCATTGTGGTTATTTTCTTATGTACTCCTTTTCTGCACACAATCTTACCTTTTGTATGTATTTTTATCTCCAtgaatgtttgttgttgttgctatacCTTCTATGTGTTTTCACAGAAATTATTAATCCTATTCAGTAAAATAAAGTCATTTAAGTTAATTCAGCTCGAAGCCTTTTGGCACCTTTCATGACAATGTACAGGCAAAAGGAGAAAGTACTAAGAGGAGCATCAAACGCAAAACATACAAACGCATCAAAATAtaaatatgtacatacaaataaaaTATTTGATATTTTTCGTCATTTGAAAATAGTCAAAGCAGTTGTCAGTCcgttccctcctcccttcctttcGTGCATATTTTCACGCATCCAGACTTCCACCCTTTTCTTAAACCTATAGGGTGAAGACACTGAGTTACTGTATGTAGGTGATTCAATCTGCTACATTGAGCGGAAGCCCGACCTCGCACTCTCACACTATTCGCGGCGCTGACCGGTCGTTGGACATAGTCTTCTTCAGCTTGACCCCTCGCCGTATGGCCAAGAGCACATCTTCCCCCTCACCGCAGCCAGGCTCCTCCTCCTGAACCTCCGGCAGGGCCTCACGGTCCCACTCTGACAACCTGCTACCAGGCTGAGCATCCCAGGGTGCCTTGGGAGACACCAAGCCGTTGTCCCCCGCTGAAGAGAGTGGGCTCAGCGgtccccctccctcgctctctcctctgaAGAACAACCCGGGGTGCTCGGGAACAGTGGGCGTCTTGACAGGGATCATGGGGGGCTTGATGGGGATGGGGCCCAGACCCAGGCCTCCGGAGGAACGCCGCAGGTTGGGCTTGGAGGAGGGCGTGCGGCGGATGGTAGCCACCCCGGGGGTGACAATACTGCCGGGGGAGGGGGCTGTGGGGGGGATGCCCGCTGTGGAGGCTGGCCGCTTGGCCTGGAACATGCGGCGATAGGACTGGCTGATGTCACTGTTGCGGGGGATGGTGGAGAACTTGTTGAAGTCGGGCTGGTCCGTCTCCTGGTCGCCACCCACGGAGAAGTAGTCATAGTCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2652720 lncRNA upstream 147 32457816 ~ 32459071 (+) True LOC110488315
TU2652721 lncRNA upstream 66376 32392468 ~ 32392842 (+) True G2319381
TU2652704 lncRNA upstream 70479 32388538 ~ 32388739 (+) True G2319374
TU2652701 lncRNA upstream 76893 32381680 ~ 32382325 (+) True G2319371
TU2652695 lncRNA upstream 79643 32373725 ~ 32379575 (+) False LOC110488310
TU2652782 lncRNA downstream 16877 32478784 ~ 32479552 (+) True G2319432
TU2652823 lncRNA downstream 76259 32538166 ~ 32539819 (+) False G2319471
TU2652824 lncRNA downstream 76259 32538166 ~ 32539819 (+) True G2319471
TU2653126 lncRNA downstream 108755 32570662 ~ 32570919 (+) True G2319718
TU2653131 lncRNA downstream 111395 32573302 ~ 32573552 (+) True G2319723
XM_021560512.2 mRNA upstream 146 32453907 ~ 32459072 (+) False LOC110488315
XR_005041295.1 mRNA upstream 60716 32395064 ~ 32398502 (+) True LOC118946461
XM_036971004.1 mRNA upstream 70851 32377055 ~ 32388367 (+) False LOC110488310
XM_036971003.1 mRNA upstream 82669 32372554 ~ 32376549 (+) True LOC118946466
XR_005041401.1 mRNA upstream 86681 32371806 ~ 32372537 (+) True LOC118946529
XR_005041389.1 mRNA downstream 147378 32609285 ~ 32614184 (+) False LOC110488320
XM_021560523.2 mRNA downstream 199110 32661017 ~ 32683300 (+) False LOC110488322
XM_021560521.2 mRNA downstream 199111 32661018 ~ 32683300 (+) False LOC110488322
XM_021560522.2 mRNA downstream 199182 32661089 ~ 32683300 (+) False LOC110488322
XM_021560524.2 mRNA downstream 201323 32663230 ~ 32683300 (+) False LOC110488322
TU2652081 other upstream 504705 31953622 ~ 31954513 (+) True G2318792
TU2652040 other upstream 517304 31934963 ~ 31941914 (+) False LOC110488305
TU2652038 other upstream 517362 31934963 ~ 31941856 (+) False LOC110488305
TU2653370 other downstream 480296 32942203 ~ 32943392 (+) True G2319921
TU2653501 other downstream 707556 33169463 ~ 33170117 (+) True LOC110487593
TU2653625 other downstream 989252 33451159 ~ 33451620 (+) True G2320160
TU2655019 other downstream 1875203 34337110 ~ 34339197 (+) True G2321378
TU2655325 other downstream 2387271 34849178 ~ 34850391 (+) True G2321656

Expression Profile