RNA id: TU2653194


Basic Information

Item Value
RNA id TU2653194
length 2051
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G2319782
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 32634427 ~ 32648468 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTGCAGCTCTCGTCGTTGTCTGAGCGGTGGGGTAGGAGGAAGGAGAAGACATTGAGGGGGCCGTCACACACCCCGGCCGTCTGGTTGACATCCTGACAGCTGGTGATCACTACATAGTAGTGTGTAGGGACTGGAGCCGAGACTGCGGCGTATCTGGGGGTCTCTTTGATCTTCACGGTGGTGTCCCGGAGGCCATCATAGTTGTTGTCAAAGATGGGACCGGTGACCACATTGATGCCGTTATTCTCCTCTGCGTAGCGCTTGAGAAGAGTCCCCTGGAGGTAGCTCCATATTTCTGCAGAGTTGAAGGGAAAAGAGAAAAAGGTACAAGCAAATGTGGTTTTGTTTTGGTACAGCAAAACAAATAACCAAAACAAATGCTTTCTAACATTGTCTGTAAAACACCTGTTGCATGAATGCATTTGGGACGTTATAAGGACTCATGAACTGAAATGAATTCTTATAGCCAGCCTTGAAAAATACTCTCTAGACTGCATCTGAGTATAGCGTTTTGTGAATACATGTTATTAATGTGGTCTCACACCATTTAAATTATAGCAGGGCACCTTGTAAGCATTTCAAAAGCCAAAGTCTGGTTTATTTTGGATGCACATTCCTTCAAGAAGAAGTGATGCCCTGCTCTAAAAGTACCCAGACAAGGGAACTGCTCTTCACATCCATCTCTACAATCATTCACCACACCAGGCTTCACTGAggctctctctttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgcaagcccgtgtgtgtgcgtgagtgcgtgtgtgagtgagtgagtgcgtgggTGGGTACTGGACGTCTCTCTCCAGTGAGAGGACAATGGGTGTCAGCCTGTCCCTTCTCTCCCAGACCTGAGGTCATCAGACTAGCCTccctcctcactccccctcctacctctccctccaCACATTAGCATGGCCAGTCCATGCAAAGATACAGCACAACACTCACAGAGGGCCACATGTACTATAAACTATGTGATTGGTAACTGTAATAGCTTTGGAGGGAAGCATCTACCAGAGAAAAACTAATATTGAGAAACAAGGATCTCCTTAGAGAACCGATAACAACAACCTGCTTAACAAAACACAGTGGCAGATTTATAAAGCATTCGAACCAGCATTTTCAAATGGGTTGGaaatatacaaataaaaatgtaatatgtaaatataaataaatgaatacTCACTTTTGAATGCAGGGTACATGGGAACGGTGTTTGTGATCAGTGATGCATCATATTTTGATTCAGGAGACAGGGCCAGCTCTAGCATAAAACATGTAAATATATACTTTAATTTACCTCCCATTTAGGCCTGGAAAAAAGCCTGCACACCACCAAGACCAGGGTCATCTTCATTAGGTACCAAACTGAGTGAAACAGGAGATACtgtctgaacttgtccaataacatACGTTTGTTTTTATTATgcattgcaaaacgttttgcttcAGTGTGccttaatgaacatgacccagggtgGACTAGTGTGCAACTCACCTGGTGGATAGAGGAAGCCATAGGAGACGTCTGTATCCTGGCTGTAGGTGGTGCAGGCCTGGCTGTGTTCAGGAGGAACCCGCAGGTctgctctcacacactcactcactggctCAGGCTCAGGGAGGGGTGTGACTTCTTCCTGGAAGGGAACATGTTGTCATTGGTAACACATTGTGAAATCCCATCGTAAAATGAGATAGAAATTGCAAACACCCATTGTTTACAAACACCCAATACAGTGTTTCTGTATGTGATTGGGGCCATTAGTTGATTTGTGTGCTGTATCGTTTCTAAATCTGTATAGGGTTCTGTTAGGTTAGTGTTACGCAAGTCCCTATCCAGGCTCTCTCCCCCCAATAAATCAAAACCAGGCTCATTCTTATACAAAATGCAATTAACCAGTTGAGTCAAAGACCAAAATTACATTTACGATCTCCTAACAGGACTACTAATTGTTTTCATGCATGCTACTCACTGCAACCATTCAAGTAAACAGATACATTTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2653182 lncRNA upstream 19868 32609843 ~ 32614559 (+) False LOC110488320
TU2653183 lncRNA upstream 19868 32609843 ~ 32614559 (+) True LOC110488320
TU2653154 lncRNA upstream 46113 32588113 ~ 32588314 (+) True G2319745
TU2653147 lncRNA upstream 50133 32584063 ~ 32584294 (+) True G2319739
TU2653140 lncRNA upstream 57004 32577222 ~ 32577423 (+) True G2319732
TU2653201 lncRNA downstream 12108 32660576 ~ 32669212 (+) False LOC110488322
TU2653202 lncRNA downstream 12108 32660576 ~ 32662785 (+) True LOC110488322
TU2653204 lncRNA downstream 132526 32780994 ~ 32781899 (+) True LOC110489432
TU2653260 lncRNA downstream 140318 32788786 ~ 32789033 (+) True G2319838
TU2653262 lncRNA downstream 141942 32790410 ~ 32806566 (+) True LOC110488323
XR_005041389.1 mRNA upstream 20243 32609285 ~ 32614184 (+) False LOC110488320
XM_021560512.2 mRNA upstream 175355 32453907 ~ 32459072 (+) False LOC110488315
XR_005041295.1 mRNA upstream 235925 32395064 ~ 32398502 (+) True LOC118946461
XM_036971004.1 mRNA upstream 246060 32377055 ~ 32388367 (+) False LOC110488310
XM_036971003.1 mRNA upstream 257878 32372554 ~ 32376549 (+) True LOC118946466
XM_021560523.2 mRNA downstream 12549 32661017 ~ 32683300 (+) False LOC110488322
XM_021560521.2 mRNA downstream 12550 32661018 ~ 32683300 (+) False LOC110488322
XM_021560522.2 mRNA downstream 12621 32661089 ~ 32683300 (+) False LOC110488322
XM_021560524.2 mRNA downstream 14762 32663230 ~ 32683300 (+) False LOC110488322
XM_021560520.2 mRNA downstream 31598 32680066 ~ 32683300 (+) False LOC110488322
TU2652081 other upstream 679914 31953622 ~ 31954513 (+) True G2318792
TU2652040 other upstream 692513 31934963 ~ 31941914 (+) False LOC110488305
TU2652038 other upstream 692571 31934963 ~ 31941856 (+) False LOC110488305
TU2653370 other downstream 293735 32942203 ~ 32943392 (+) True G2319921
TU2653501 other downstream 520995 33169463 ~ 33170117 (+) True LOC110487593
TU2653625 other downstream 802691 33451159 ~ 33451620 (+) True G2320160
TU2655019 other downstream 1688642 34337110 ~ 34339197 (+) True G2321378
TU2655325 other downstream 2200710 34849178 ~ 34850391 (+) True G2321656

Expression Profile