RNA id: TCONS_00059093


Basic Information

Item Value
RNA id TCONS_00059093
length 436
RNA type processed_transcript
GC content 0.43
exon number 3
gene id XLOC_030218
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 33281105 ~ 33283718 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGAAACGTAGAAAGTGGAAGTTGGAGCTGATCAGTGAACTTCAGAGTCTGACGACTTCAGTGCCAATCCCACTGCCTGTAGATACTATGGAAATCAAGCAGCTGGAGTACAGGCGTGTGAAGGTCCGTGGACATTTTGATCACTCTAAGGAGCTGTATATTTTGCCCCGTTCCCCTGTGGACCCTGAGAGAGAGGCTCGAGAGGCAGGGAGGATATCCTCCAGTGGTGAAAGTGGAGCAAATGTTATTACACCCTTTTTCTGCACTGATCTGGGGATCACTATCTTGGTGAACAGAGGTTATGTACCCAAAAACAAGATCAAACCAGAAACCAGGACGAAAGGACAGGTAATATAGtgcttttcttaatttatttttagatcaAATCTAGGCGTAAATATtgccaattaattttttttctttgttagtCCAAACT

Function

GO:

id name namespace
GO:0021522 spinal cord motor neuron differentiation biological_process
GO:0048568 embryonic organ development biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG:

id description
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-041108-2 Enables cytochrome-c oxidase activity. Acts upstream of or within embryonic organ development and spinal cord motor neuron differentiation. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 4K; Leigh disease; and cytochrome-c oxidase deficiency disease. Orthologous to human SURF1 (SURF1 cytochrome c oxidase assembly factor).

Ensembl:

ensembl_id ENSDART00000135533

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00059086 lncRNA upstream 349493 32928834 ~ 32932768 (+) False XLOC_030215
TCONS_00059079 lncRNA upstream 395853 32883593 ~ 32886408 (+) False XLOC_030211
TCONS_00059076 lncRNA upstream 396190 32882700 ~ 32886071 (+) False XLOC_030211
TCONS_00059073 lncRNA upstream 426165 32850839 ~ 32856096 (+) False XLOC_030210
TCONS_00061733 lncRNA upstream 914780 32358880 ~ 32367481 (+) True XLOC_030206
TCONS_00061735 lncRNA downstream 49574 33332449 ~ 33338469 (+) False XLOC_030221
TCONS_00059098 lncRNA downstream 49673 33332548 ~ 33338466 (+) False XLOC_030221
TCONS_00061736 lncRNA downstream 49673 33332548 ~ 33338469 (+) True XLOC_030221
TCONS_00061439 lncRNA downstream 652744 33935619 ~ 33937420 (+) True XLOC_030228
TCONS_00061442 lncRNA downstream 1010386 34293261 ~ 34294841 (+) False XLOC_030229
TCONS_00059089 mRNA upstream 177895 33067283 ~ 33104366 (+) False XLOC_030217
TCONS_00059090 mRNA upstream 178216 33070608 ~ 33104045 (+) True XLOC_030217
TCONS_00059087 mRNA upstream 320238 32932357 ~ 32962023 (+) True XLOC_030215
TCONS_00059084 mRNA upstream 336006 32924669 ~ 32946255 (+) False XLOC_030215
TCONS_00059083 mRNA upstream 362112 32914321 ~ 32920149 (+) True XLOC_030214
TCONS_00059094 mRNA downstream 4736 33287611 ~ 33291719 (+) False XLOC_030219
TCONS_00059095 mRNA downstream 4843 33287718 ~ 33292251 (+) False XLOC_030219
TCONS_00059096 mRNA downstream 6182 33289057 ~ 33294747 (+) True XLOC_030219
TCONS_00059097 mRNA downstream 18130 33301005 ~ 33330923 (+) True XLOC_030220
TCONS_00059099 mRNA downstream 56887 33339762 ~ 33347993 (+) True XLOC_030222
TCONS_00059088 other upstream 288370 32993786 ~ 32993891 (+) True XLOC_030216
TCONS_00059085 other upstream 349493 32924918 ~ 32932768 (+) False XLOC_030215
TCONS_00059077 other upstream 395352 32882707 ~ 32886909 (+) False XLOC_030211
TCONS_00059114 other downstream 1637520 34920395 ~ 34921911 (+) True XLOC_030237
TCONS_00059121 other downstream 2175359 35458234 ~ 35461749 (+) False XLOC_030242
TCONS_00059135 other downstream 3222598 36505473 ~ 36506619 (+) True XLOC_030253
TCONS_00059140 other downstream 3316232 36599107 ~ 36609700 (+) False XLOC_030256
TCONS_00059142 other downstream 3316274 36599149 ~ 36605565 (+) True XLOC_030256

Expression Profile

//