RNA id: TU2653914



Basic Information


Item Value
RNA id TU2653914
length 249
lncRNA type intronic
GC content 0.42
exon number 1
gene id G2320418
representative True

Chromosome Information


Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 34008095 ~ 34008343 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tccttgcagcatgcctaaggcacgttcacgcagatgagcagggatcctgggcatctttcttttggtgtttttcagagtcagtagaaaggcctctttagtgtcctaagttttcataactgtgaccttaattgcctaccgtctgtaaagcTGTTAGTgacttaacaaccgttccacaggtgcatattcattaattgtttatggtgcattgaacaagcatgggaaacagtgtttaaaccctttacaatgaag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2653908 lncRNA upstream 7372 34000486 ~ 34000723 (+) True G2320412
TU2653907 lncRNA upstream 8431 33999120 ~ 33999664 (+) True G2320411
TU2653892 lncRNA upstream 27325 33980494 ~ 33980770 (+) True G2320396
TU2653863 lncRNA upstream 73045 33934573 ~ 33935050 (+) True G2320373
TU2653822 lncRNA upstream 150774 33853450 ~ 33857321 (+) True LOC110488369
TU2653915 lncRNA downstream 466 34008809 ~ 34009096 (+) True G2320419
TU2653916 lncRNA downstream 832 34009175 ~ 34009427 (+) True G2320420
TU2654883 lncRNA downstream 139068 34147411 ~ 34149132 (+) False G2321274
TU2654882 lncRNA downstream 140060 34148403 ~ 34149325 (+) True G2321274
TU2654962 lncRNA downstream 241507 34249850 ~ 34250053 (+) True G2321327
XM_036970887.1 mRNA upstream 48698 33939551 ~ 33959397 (+) False LOC110488371
XM_021560602.2 mRNA upstream 48698 33939552 ~ 33959397 (+) False LOC110488371
XM_021560603.2 mRNA upstream 48698 33939552 ~ 33959397 (+) True LOC110488371
XM_021560601.2 mRNA upstream 96295 33889547 ~ 33911800 (+) True LOC110488370
XM_036970687.1 mRNA upstream 119616 33853421 ~ 33888479 (+) False LOC110488369
XM_021560604.2 mRNA downstream 47605 34055948 ~ 34081652 (+) True LOC110488372
LOC110487598 mRNA downstream 88109 34096452 ~ 34106714 (+) True LOC110487598
XM_036971691.1 mRNA downstream 117909 34126252 ~ 34131986 (+) True LOC110488373
XM_021560606.2 mRNA downstream 127438 34135781 ~ 34145442 (+) True LOC110488374
XM_021560609.2 mRNA downstream 162802 34171145 ~ 34193656 (+) True LOC110488377
TU2653625 other upstream 556475 33451159 ~ 33451620 (+) True G2320160
TU2653501 other upstream 837978 33169463 ~ 33170117 (+) True LOC110487593
TU2653370 other upstream 1064703 32942203 ~ 32943392 (+) True G2319921
TU2652081 other upstream 2053582 31953622 ~ 31954513 (+) True G2318792
TU2652051 other upstream 2066545 31934963 ~ 31941550 (+) False LOC110488305
TU2655019 other downstream 328767 34337110 ~ 34339197 (+) True G2321378
TU2655325 other downstream 840835 34849178 ~ 34850391 (+) True G2321656
TU2655502 other downstream 961878 34970221 ~ 34970626 (+) True LOC110489302
TU2655559 other downstream 1264796 35273139 ~ 35277663 (+) True LOC110487604
TU2655443 other downstream 1432691 35441034 ~ 35493951 (+) False LOC110489253

Expression Profile