RNA id: TU2655325



Basic Information


Item Value
RNA id TU2655325
length 1214
RNA type TUCP
GC content 0.43
exon number 1
gene id G2321656
representative True

Chromosome Information


Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 34849178 ~ 34850391 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTGcgcaaacaatgttttttttttattgtgcagCAGATGGGTTACACCGCTTTCACTGACCTCAATATACTATCGAAATGTggaaagaaaatgtcaaatacaTAAATTAAACAAAATAATATTGTAGCTGTGGATCAGGTATTAACAAATGGTTCAACAATGAAAACAAATAAACATGTCCAGGTGGAGTTTCTTTAAACCCACAGCTCAGAACGGTATGCCTGTCCATTAACGGTCTTTACCATCAAAACAGCATTTGATGTATGCTCAAATTCGTCACATTTTCCATTAATTTGGACTCCGCAAACTTGTAGAACATATTTCCCTGAATGGCAGTCATCTACAAAAACTAGCAGGGCTCTCAAAGGAAGGAATACAGTGTCTGCAGTATGTCAGTGCTTCTACCATTCATGAATCATGCAGAAACTCACACCGCAGATCATCATTCTGCTGTGCCACCTGACAATGAAAGAGCCATGAATCAAAGACTATAAAAACTTAATCCAATTAACATGAACAGCAGGATGGAGCAAACATATTTTTTCTGTGTAACTGCTGTAATAGGCTACATCACAAAATTATCCCGTGTGTGGCTTTTAATTAATAGTGACAGACTACAACCGTTTACACAAAATCCATCTCTTtccttcaaaaaaaaaaaaagtgtaaacaTATCTCtcgctcaacaacaaaaaactaccCTCGGTGCCCCCAATGCAGTAATCCTGCAATTAGCCCTTCAGAAAATGTTTCAAACACAATGAATAAGATACTTCAAgagaagaggtaaaaaaaaaaagaaatacgaAAAAAGAAAGTGTGACTCCCCATGAAGGTCAATAACTTTTCAGTCTACCTTCCCTCCATGTCTAAACTTATAGGAGGAAAGGACCCTCCATTAGTTTCTGAACCTGTAGGAGATGGGCAGAAGCAGGTGGTTCTTCTTCATGGCTGCCACTTTAGCGTGCATGGGCTCGTCCAGGGCCTTGTAGCAGCGACGGGCGTAGTCCAGGAGCTTCTCCTTGGAAGACTCAAACTCGCCCACCTCGGCCACCTTCTCTGGGGCTACCAGCAGCAGCTCGGCGATGGGGGATGTGGAGGCCATAGTGTTGCGGTCCACCCGGTGGACCTGGAAGGCCTTGGACATGCTCCTCAGGCGCTGGTAGGTGAGGAGGATCTTCTGGTACCGGTGCAGCACACCGTCAGGATCTTtc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2655316 lncRNA upstream 19631 34829263 ~ 34829547 (+) True G2321650
TU2655303 lncRNA upstream 40186 34808705 ~ 34808992 (+) True G2321638
TU2655297 lncRNA upstream 56229 34789371 ~ 34792949 (+) True G2321632
TU2655290 lncRNA upstream 69270 34772718 ~ 34779908 (+) True G2321625
TU2655275 lncRNA upstream 102701 34741587 ~ 34746477 (+) True G2321615
TU2655419 lncRNA downstream 110396 34960787 ~ 34966555 (+) True LOC110489330
TU2655506 lncRNA downstream 129192 34979583 ~ 34979802 (+) True G2321804
TU2655486 lncRNA downstream 130634 34981025 ~ 34981617 (+) True G2321788
TU2655633 lncRNA downstream 277605 35127996 ~ 35174180 (+) True G2321899
TU2655639 lncRNA downstream 286614 35137005 ~ 35138542 (+) True G2321904
XM_021562021.2 mRNA upstream 281553 34522254 ~ 34567625 (+) False LOC110489308
XM_021562020.2 mRNA upstream 281553 34554920 ~ 34567625 (+) True LOC110489308
XM_021561991.2 mRNA upstream 386682 34444152 ~ 34462496 (+) True LOC110489290
XM_021561984.2 mRNA upstream 453769 34374121 ~ 34395409 (+) False LOC110489288
XM_021561986.2 mRNA upstream 454212 34374118 ~ 34394966 (+) False LOC110489288
XM_021562029.2 mRNA downstream 38495 34888886 ~ 34894719 (+) False LOC110489311
XM_021562030.2 mRNA downstream 38614 34889005 ~ 34894719 (+) True LOC110489311
XM_021562007.2 mRNA downstream 87704 34938095 ~ 34941903 (+) True LOC110489298
XM_021562058.2 mRNA downstream 110346 34960737 ~ 34966594 (+) False LOC110489330
XR_002468550.2 mRNA downstream 110346 34960737 ~ 34966594 (+) False LOC110489330
TU2655019 other upstream 509981 34337110 ~ 34339197 (+) True G2321378
TU2653625 other upstream 1397558 33451159 ~ 33451620 (+) True G2320160
TU2653501 other upstream 1679061 33169463 ~ 33170117 (+) True LOC110487593
TU2653370 other upstream 1905786 32942203 ~ 32943392 (+) True G2319921
TU2652081 other upstream 2894665 31953622 ~ 31954513 (+) True G2318792
TU2655502 other downstream 119830 34970221 ~ 34970626 (+) True LOC110489302
TU2655559 other downstream 422748 35273139 ~ 35277663 (+) True LOC110487604
TU2655443 other downstream 590643 35441034 ~ 35493951 (+) False LOC110489253
TU2655436 other downstream 640740 35491131 ~ 35498127 (+) True G2321738
TU2655448 other downstream 644903 35495294 ~ 35500215 (+) False LOC110489253

Expression Profile