RNA id: TU2655413


Basic Information

Item Value
RNA id TU2655413
length 1876
RNA type TUCP
GC content 0.51
exon number 3
gene id G2321721
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 35586587 ~ 35594913 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAGAAGTGTCCTATACAGTTATGGGAACCCCCACGTAACACGTAACCCATAATCGTCATCATTAGGCGTTCGTGTGTGACTCACCAAGGGGAGGGTAGGCGGCAAAGCTCTCCACACACATGGGCTTTCCTGGCACCATGACAATGATGGCGGCGTCTCCAGATTTCAGGGCTTTGGGGTTGTCCTCAAGCTTCTTGCCGGAACGACGGTCGATCTTCTCCTTGAGCTCGCTGAACTTGCAGGCGATGTGAGCGGTGTGGCAATCCAGCACGGGGGCATAGCCCTGGGAGATGGTGCCGGGGTGGTTCAGGATGATGACCTGAAGATTGGGGTAAAGTTTGGGTAAGGATGGGCTGGACTCTAGACCTACAGTGAAAGGGGGTTGGTACGTGGCAAAACTGAATTTAAAAAgtgcactttaaaaaaaatgtgtttatgaAAGTGCTAATTTATGGCCAGAAACGAGACATGTAGTAAAGTAGACTTAAAATATTAGTATTATCTTTCCAAAAACGACATTGAAAATTAGTTCCATCTCTCACCTGAGCGGTGAAGTTGCCGGCCTCCATTGGGGGGTCATTCTTGCTGTCTCCAGCCACGTTGCCACGACGGATATCCTTGACGGACACGTTCTTGACGTTGAATCCAACATTGTCACCGGGTAGAGCCGCTTCCAGGGTCTCGTGGTGCATCTCCACAGACTTCACCTCAGTGGTGACATTAGCGGGGGCGAAGGTGACGATCATACCGGCCTTCAGGGTGCCAGTCTCCACAGACTTCACCTCAGTGGTGACATTAGCGGGGGCGAAGGTGACGATCATACCGGCCTTCAGGGTGCCAGTCTCCACACGGCCCACGGGTACTGTTCCAATACCTGATGGGAAACCAGGGGAGAATAGATTAACGATCAAGAGCAGAAGCAAATACAGCCTATATACAATCATGAAGTCTAGGACTGGTTCTTACCGCCGATTTTGTAGACATCCTGGAGGGGCAGACGAAGGGGCTTGTCTGTGGGGCGGGAGGGGGGCAGGATTGAGTCCAGGGCCTCCAGCAGAGTCACACCGTTGGCGTTACCATCCTTACGTTCGACCTTCCATCCCTTGAACCAGCCCATCTAGAATAGGAGAATTTCTGTTTATGTACAAAGCATGACATAATACGCAAGTGACGGGGTGAGACTTTCAATGTAGTAGAATGCACTGAGGATAGGCTACTCACATTGGCACTGGCTTCCAGCATGTTGTCCCCATGCCAACCAGAGATGGGCACAAAAGCGACAGTGGCAGGGTTGTAGCCAATCTTCTTGATGTAGGTGGTGACCTCCTTCTGGATCTCCTCAAACCGCTTCTGGCTGTAGGGGGGCTCAGTAGAGTCCATCTTGTTGACGCCAACAATGAGCTGTTTCACTCCCAGAGTGTAGGCGAGGAGAGCGTGCTCACGGGTCTGGCCGTTCTTGGAGATACCAGCCTCAAACTCACCCACACCACCAGCAACAACCAGCACAGCGCAAtcagcctgggggggggggggacaagtcATGTCAGCCCAACACACTTGTTCATCTATCACCTTAGTTGGTCAGGTTTACAGTATATTCTGATTGCACTGCCCCCGCCCCCCAATTACCTGAGAGGTACCAGTGATCATGTTCTTGATGAAATCTCTGTGTCCAGGGGCATCAATGATTGTGACGTAGTACCTGCCGGTCTCAAACTTCCACAGAGAAATGTCAATGGTGATACCACGCTCCCTCTCAGCCTTCAGCTTGTCCAGCACCCAGGCATACTTGAAAGAGCCCTTGCCCATCTAAAATTAGAGGAAAGGCACATTATGTTCAATAATTCATTTTACCGAGCCTATTCCAAAGGATGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2655477 lncRNA upstream 1811 35584478 ~ 35584776 (+) True G2321779
TU2655766 lncRNA upstream 2401 35583814 ~ 35584186 (+) True G2322023
TU2655765 lncRNA upstream 8683 35575451 ~ 35577904 (+) True G2322022
TU2655763 lncRNA upstream 13310 35573054 ~ 35573277 (+) True G2322020
TU2655762 lncRNA upstream 13845 35572484 ~ 35572742 (+) True G2322019
TU2655768 lncRNA downstream 2925 35597838 ~ 35598075 (+) True G2322025
TU2655775 lncRNA downstream 11050 35605963 ~ 35606251 (+) True G2322032
TU2655461 lncRNA downstream 25556 35620469 ~ 35626505 (+) True G2321763
TU2655821 lncRNA downstream 91510 35686423 ~ 35686653 (+) True G2322074
TU2655823 lncRNA downstream 92453 35687366 ~ 35687567 (+) True G2322076
XM_021561943.2 mRNA upstream 18196 35558560 ~ 35568391 (+) False LOC110489268
XM_021561944.2 mRNA upstream 18196 35558560 ~ 35568391 (+) False LOC110489268
XM_021561942.2 mRNA upstream 18196 35558561 ~ 35568391 (+) True LOC110489268
XM_036971071.1 mRNA upstream 65134 35492305 ~ 35521453 (+) False LOC110489253
XM_036971112.1 mRNA upstream 94069 35487909 ~ 35492518 (+) True LOC118936453
XM_021562008.2 mRNA downstream 43299 35638212 ~ 35643788 (+) True LOC110489299
XM_021561938.2 mRNA downstream 98356 35693269 ~ 35702960 (+) False ncdn
XM_021561939.2 mRNA downstream 98692 35693605 ~ 35702960 (+) True ncdn
XM_021561971.2 mRNA downstream 109001 35703914 ~ 35715579 (+) False LOC110489281
XM_021561972.2 mRNA downstream 109007 35703920 ~ 35715579 (+) False LOC110489281
TU2655429 other upstream 75962 35502604 ~ 35510625 (+) True LOC110489253
TU2655448 other upstream 86372 35495294 ~ 35500215 (+) False LOC110489253
TU2655436 other upstream 88460 35491131 ~ 35498127 (+) True G2321738
TU2655443 other upstream 92636 35441034 ~ 35493951 (+) False LOC110489253
TU2655559 other upstream 308924 35273139 ~ 35277663 (+) True LOC110487604
TU2657401 other downstream 697865 36292778 ~ 36295589 (+) True LOC110511601
TU2657433 other downstream 733491 36328404 ~ 36408978 (+) True G2323520
TU2657653 other downstream 1052900 36647813 ~ 36648422 (+) True G2323704
TU2657882 other downstream 1344169 36939082 ~ 37071496 (+) True LOC110488401
TU2657967 other downstream 1457152 37052065 ~ 37062067 (+) True G2324003

Expression Profile