RNA id: TU2656792



Basic Information


Item Value
RNA id TU2656792
length 524
lncRNA type intronic
GC content 0.46
exon number 2
gene id G2322921
representative True

Chromosome Information


Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 35720399 ~ 35722133 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


atcTTGCACTGGGTACCTACCAGGGATCCAGAACAACAACTGGGCCTCTTGATAACCCCAGGAGTAAGCGCCAAGCTTCAGAGAGATGGTGTGAGAGAAGGGAAGATGGAGAACACTGGCAAGCAACTGTGAAGAAACCTGAAATAAACTAGCTGCATTATGTATTTCAAAACTGTATTTGGACTGCAAATTTCAGTGGCAGTGGTCTTTTACAGGGTTTGTAAACCATTACCTCAGTCAGATGTCGCCTCTTGGGTTGTATCCAAAAGAACAAGTAAGACTTCTTGCTTATTTAAAGATTTAGCAAGAAGTCCACAGCAACAGTTTGTGGTGCTAGCGTCACATATGGGGTTTTCTTTTTTTAGTACAGCACGGGCACAAATAATTACTAGTGCCATATTGCACACGACTCCCCTGTTCCAGCACAGATGAACAATTAATACAGCACATTGAGGAGAAATGCCAATAAAGAGAACATGTCCTGGCGCACGGAGAGGGAGGGCGCGGCGcacggagaggggggg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2656789 lncRNA downstream 4862 35714547 ~ 35715537 (-) True G2322918
TU2656754 lncRNA downstream 26624 35693349 ~ 35693775 (-) True G2322905
TU2656753 lncRNA downstream 28602 35691588 ~ 35691797 (-) True G2322904
TU2656752 lncRNA downstream 28814 35691257 ~ 35691585 (-) True G2322903
TU2656750 lncRNA downstream 29775 35690175 ~ 35690624 (-) True G2322901
TU2656807 lncRNA upstream 12386 35734519 ~ 35734825 (-) True G2322935
TU2656812 lncRNA upstream 20087 35742220 ~ 35742579 (-) True G2322940
TU2656817 lncRNA upstream 22902 35745035 ~ 35745288 (-) True G2322945
TU2656822 lncRNA upstream 26973 35749106 ~ 35749400 (-) True G2322950
TU2657047 lncRNA upstream 55147 35777280 ~ 35785043 (-) True G2323146
XM_036971718.1 mRNA downstream 27521 35656975 ~ 35692878 (-) False LOC110489259
XM_036971716.1 mRNA downstream 37232 35656975 ~ 35683167 (-) False LOC110489259
XM_036971720.1 mRNA downstream 37232 35658709 ~ 35683167 (-) True LOC110489259
XM_036971717.1 mRNA downstream 37276 35656975 ~ 35683123 (-) False LOC110489259
XM_036971719.1 mRNA downstream 39079 35656975 ~ 35681320 (-) False LOC110489259
XM_021562016.2 mRNA upstream 13170 35735303 ~ 35739823 (-) False LOC110489305
XM_021562017.2 mRNA upstream 13170 35735303 ~ 35740614 (-) False LOC110489305
XM_036971649.1 mRNA upstream 13170 35735303 ~ 35740939 (-) True LOC110489305
XM_021561908.2 mRNA upstream 30693 35752826 ~ 35776271 (-) False LOC110489257
XM_021561910.2 mRNA upstream 30693 35752826 ~ 35776271 (-) False LOC110489257
TU2656426 other downstream 150983 35568749 ~ 35569416 (-) True G2322592
TU2656379 other downstream 198945 35477914 ~ 35521454 (-) True G2322545
TU2656650 other downstream 365725 35352788 ~ 35354674 (-) True LOC110489319
TU2656535 other downstream 528270 35184884 ~ 35192129 (-) False G2322701
TU2657054 other upstream 88917 35811050 ~ 35814601 (-) True G2323152
TU2659258 other upstream 1482466 37204599 ~ 37236925 (-) True LOC110488406
TU2659343 other upstream 1546478 37268611 ~ 37274559 (-) True si:ch211-153f2.3
TU2659711 other upstream 2158806 37880939 ~ 37884393 (-) False LOC110517080
TU2659713 other upstream 2158862 37880995 ~ 37884393 (-) False LOC110517080

Expression Profile


TU2656792 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.
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TU2656792 Expression in each Bioproject

Bar chart with 19 bars.
TU2656792 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
End of interactive chart.