RNA id: TU2656992



Basic Information


Item Value
RNA id TU2656992
length 327
lncRNA type intronic
GC content 0.38
exon number 1
gene id G2323096
representative True

Chromosome Information


Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 36000275 ~ 36000601 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ctgtggcattgtgttgcgagtcaaaactgcacattttagagtggccttttattgtccctagcacaaggtgcactgtaatgatcatgctgtttaatcagctttttgatatgccacatgtcaggtggctggattattttggcaaaggagaaatgctcactaaaagggatataaacaaaacttgagcacaacatttgagagaaatacgctttttgtacgtatggaacatttctgggatcttttatttcagctcatgaaaaacgggaccaacactttacatgttgcgttcagatttttttttgttcagtacagaTATTGACACGATAGAAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2656987 lncRNA upstream 12802 35987251 ~ 35987473 (+) True G2323091
TU2656983 lncRNA upstream 17008 35983040 ~ 35983267 (+) True G2323087
TU2656982 lncRNA upstream 18467 35981584 ~ 35981808 (+) True G2323086
TU2656941 lncRNA upstream 96491 35903389 ~ 35903784 (+) True G2323045
TU2656939 lncRNA upstream 100151 35899684 ~ 35900124 (+) True G2323043
TU2657042 lncRNA downstream 89862 36090463 ~ 36092710 (+) True LOC110488378
TU2657260 lncRNA downstream 97486 36098087 ~ 36098321 (+) True G2323351
TU2657262 lncRNA downstream 99147 36099748 ~ 36099966 (+) True G2323353
TU2657269 lncRNA downstream 105544 36106145 ~ 36106539 (+) True G2323360
TU2657310 lncRNA downstream 169754 36170355 ~ 36171987 (+) True G2323400
XM_021562023.2 mRNA upstream 163505 35822735 ~ 35836770 (+) False LOC110489309
XM_021562022.2 mRNA upstream 163505 35822752 ~ 35836770 (+) False LOC110489309
XM_021562043.2 mRNA upstream 181579 35815808 ~ 35818696 (+) True LOC110489318
XM_036971779.1 mRNA upstream 185642 35777248 ~ 35814633 (+) True ago4
XR_002468391.2 mRNA downstream 87507 36088108 ~ 36092060 (+) False LOC110488378
XR_002468392.2 mRNA downstream 87507 36088108 ~ 36092060 (+) False LOC110488378
XM_036971425.1 mRNA downstream 285126 36285727 ~ 36298893 (+) False LOC110511601
XM_036971424.1 mRNA downstream 285129 36285730 ~ 36298893 (+) False LOC110511601
XM_036971426.1 mRNA downstream 290726 36291327 ~ 36298893 (+) False LOC110511601
TU2655413 other upstream 405362 35586587 ~ 35594913 (+) False G2321721
TU2655401 other upstream 405362 35587780 ~ 35594913 (+) False G2321721
TU2655410 other upstream 405362 35590041 ~ 35594913 (+) True G2321721
TU2655405 other upstream 406597 35586587 ~ 35593678 (+) False G2321721
TU2655429 other upstream 489650 35502604 ~ 35510625 (+) True LOC110489253
TU2657401 other downstream 292177 36292778 ~ 36295589 (+) True LOC110511601
TU2657433 other downstream 327803 36328404 ~ 36408978 (+) True G2323520
TU2657653 other downstream 647212 36647813 ~ 36648422 (+) True G2323704
TU2657882 other downstream 938481 36939082 ~ 37071496 (+) True LOC110488401
TU2657967 other downstream 1051464 37052065 ~ 37062067 (+) True G2324003

Expression Profile