RNA id: TU2657269


Basic Information

Item Value
RNA id TU2657269
length 395
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G2323360
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 36106145 ~ 36106539 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgcagtcaaacactatgcacaaccctcactgagataacacacactgtcactcagaacacactgagagtaaaaacactagcatcaaacaccaatacagaaaatacaaacttttcatctttacagtttgaacaatttcagtgacttcatacaaagtaatattttcttcaaagaaaagagtgacattctttcacatgatttattaaactttttagaacataacaattctttaaggtaaatgaaaattagcagtttgcttcaatagtctgtagtaatttacggaattacagtaatgagaaaaaaaggtagaaactaaaagtacatactgtaattcgaacaaataattgaggggctaatcctgcctctctctagcatcaggccacaggttttcttcaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2657262 lncRNA upstream 6179 36099748 ~ 36099966 (+) True G2323353
TU2657260 lncRNA upstream 7824 36098087 ~ 36098321 (+) True G2323351
TU2657042 lncRNA upstream 13435 36090463 ~ 36092710 (+) True LOC110488378
TU2656992 lncRNA upstream 105544 36000275 ~ 36000601 (+) True G2323096
TU2656987 lncRNA upstream 118672 35987251 ~ 35987473 (+) True G2323091
TU2657310 lncRNA downstream 63816 36170355 ~ 36171987 (+) True G2323400
TU2657387 lncRNA downstream 159728 36266267 ~ 36269214 (+) True G2323477
TU2657396 lncRNA downstream 171570 36278109 ~ 36278316 (+) True G2323486
TU2657402 lncRNA downstream 183608 36290147 ~ 36290436 (+) True G2323492
TU2657403 lncRNA downstream 183984 36290523 ~ 36290774 (+) True G2323493
XR_002468391.2 mRNA upstream 14085 36088108 ~ 36092060 (+) False LOC110488378
XR_002468392.2 mRNA upstream 14085 36088108 ~ 36092060 (+) False LOC110488378
XM_021562023.2 mRNA upstream 269375 35822735 ~ 35836770 (+) False LOC110489309
XM_021562022.2 mRNA upstream 269375 35822752 ~ 35836770 (+) False LOC110489309
XM_021562043.2 mRNA upstream 287449 35815808 ~ 35818696 (+) True LOC110489318
XM_036971425.1 mRNA downstream 179188 36285727 ~ 36298893 (+) False LOC110511601
XM_036971424.1 mRNA downstream 179191 36285730 ~ 36298893 (+) False LOC110511601
XM_036971426.1 mRNA downstream 184788 36291327 ~ 36298893 (+) False LOC110511601
XM_036971163.1 mRNA downstream 210532 36317071 ~ 36397386 (+) False LOC110488383
XM_036971164.1 mRNA downstream 210532 36317071 ~ 36397386 (+) True LOC110488383
TU2655413 other upstream 511232 35586587 ~ 35594913 (+) False G2321721
TU2655401 other upstream 511232 35587780 ~ 35594913 (+) False G2321721
TU2655410 other upstream 511232 35590041 ~ 35594913 (+) True G2321721
TU2655405 other upstream 512467 35586587 ~ 35593678 (+) False G2321721
TU2655429 other upstream 595520 35502604 ~ 35510625 (+) True LOC110489253
TU2657401 other downstream 186239 36292778 ~ 36295589 (+) True LOC110511601
TU2657433 other downstream 221865 36328404 ~ 36408978 (+) True G2323520
TU2657653 other downstream 541274 36647813 ~ 36648422 (+) True G2323704
TU2657882 other downstream 832543 36939082 ~ 37071496 (+) True LOC110488401
TU2657967 other downstream 945526 37052065 ~ 37062067 (+) True G2324003

Expression Profile