RNA id: TU2666376



Basic Information


Item Value
RNA id TU2666376
length 359
RNA type TUCP
GC content 0.46
exon number 3
gene id LOC110513705
representative True

Chromosome Information


Item Value
chromosome id NW_023493658.1
NCBI id JAAXML020000857.1
chromosome length 2864942
location 1192764 ~ 1202030 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACGATTGTTGAAACGTGAACACAtgttaacaaaaaaaacacaccgGCATAGCAATATACAATTCATAGACAGCCAACATGAGAGATACGCCGTTATCAAACTGCGAGCGGGACTTTTTACTCAAAGCTATTCAAGAAAAAAAGCGCTTGGATGGGAGACAGACCTATGACTACAGGAGCATCAAGATCTCGTTCGGGACAGATTATGGATGCTGCTTTGTTGACCTGGGGAAGACGAGGATCATGGCCCAGGTGTCCTGTGAGCTCATTACTCCGAAAGAGAACCGACCGAATGAAGGACTCATTTTCTTCAACATTGAGCTGTCTCCCATGGCTTCTCCAGCATTTGAGATGGGCAGG

Function


GO: NA

KEGG: NA

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU2665811 lncRNA downstream 9990 1184934 ~ 1190522 (-) False G2330925
TU2665807 lncRNA downstream 9990 1186971 ~ 1190522 (-) True G2330925
TU2665822 lncRNA downstream 12063 1185643 ~ 1188449 (-) True G2330931
TU2665818 lncRNA downstream 12903 1183475 ~ 1187609 (-) True G2330927
TU2665814 lncRNA downstream 14426 1174887 ~ 1186086 (-) False G2330925
TU2666396 lncRNA upstream 22096 1224082 ~ 1414625 (-) True G2331309
TU2666387 lncRNA upstream 23422 1225408 ~ 1425079 (-) False G2331305
TU2666397 lncRNA upstream 49665 1251651 ~ 1271417 (-) True G2331310
TU2666436 lncRNA upstream 65953 1267939 ~ 1428158 (-) True G2331346
TU2666449 lncRNA upstream 78407 1280393 ~ 1287965 (-) True G2331351
XM_036971897.1 mRNA downstream 87136 1098558 ~ 1113376 (-) True LOC110513306
XR_005041621.1 mRNA downstream 121938 1077674 ~ 1078574 (-) False LOC110513304
XM_036971898.1 mRNA downstream 122144 1077670 ~ 1078368 (-) False LOC110513304
XM_036971867.1 mRNA downstream 251024 806485 ~ 949488 (-) False LOC118946760
XM_036971873.1 mRNA downstream 404530 733803 ~ 795982 (-) False LOC110519451
XM_036971915.1 mRNA upstream 25425 1227411 ~ 1235588 (-) False LOC110511394
XM_036971916.1 mRNA upstream 25425 1227411 ~ 1235589 (-) False LOC110511394
XM_036971913.1 mRNA upstream 25425 1227411 ~ 1236812 (-) False LOC110511394
XM_036971914.1 mRNA upstream 25425 1227411 ~ 1236818 (-) True LOC110511394
XM_036971908.1 mRNA upstream 183274 1385260 ~ 1393716 (-) False LOC110513025
TU2665469 other downstream 381919 807938 ~ 818593 (-) True LOC118946760
TU2665505 other downstream 515682 664211 ~ 684830 (-) True G2330705
TU2665500 other downstream 565633 633911 ~ 634879 (-) True G2330702
TU2664995 other downstream 1159402 39516 ~ 41110 (-) True G2330314
TU2666383 other upstream 23422 1225408 ~ 1425079 (-) False G2331305
TU2666386 other upstream 23422 1225408 ~ 1425079 (-) False G2331305
TU2666389 other upstream 23422 1225408 ~ 1425079 (-) False G2331305
TU2666379 other upstream 24630 1226616 ~ 1235544 (-) False G2331305
TU2666384 other upstream 24630 1226616 ~ 1235544 (-) False G2331305

Expression Profile


TU2666376 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
End of interactive chart.

TU2666376 Expression in each Bioproject

Bar chart with 18 bars.
TU2666376 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
End of interactive chart.