RNA id: XM_036971912.1



Basic Information


Item Value
RNA id XM_036971912.1
length 480
RNA type mRNA
GC content 0.52
exon number 4
gene id LOC110518942
representative False

Chromosome Information


Item Value
chromosome id NW_023493658.1
NCBI id JAAXML020000857.1
chromosome length 2864942
location 1418841 ~ 1426336 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTGTCGGCCGCGTCGGTCCCTACACCCAGATAATGTGAGGACGTCCCATCGCCGACTGTCATACATGGAAATCCGCAGTGTCGTCTAGCACATAACAACGTTATCCACACTAAACCCCGGCTAACGTTTTGACACAATATTGTTATTATATCGAAGGGGAACAGAGGAACTGCAGTCCTGCTCACCAAACAGGACAACGAGGACTTCACCATGAACTGTCACATGGATGacatggagaaccaggtagagatggaggagaagacgAGGCTCATCAACCAGGTGCTGGAGCTACAACACACACTGGAAGACCTGTCAGCACGTGTGGATGCGGTCAAAGAGGAGAACCTGAAGTTGAAGTCGGAGAACCAGGTTCTAGGCCAGTACATCGAGAACCTCATGTCGGCCTCCAGCGTGTTCCAAACCACCGACAACAAGAGCAAACGGAAGTAACCCACGGCGACCAAGGGGAGTTGAGACCAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2666396 lncRNA downstream 4216 1224082 ~ 1414625 (-) True G2331309
TU2666398 lncRNA downstream 6003 1411048 ~ 1412838 (-) True G2331311
TU2666489 lncRNA downstream 16579 1401668 ~ 1402262 (-) True G2331380
TU2666402 lncRNA downstream 35498 1381327 ~ 1383343 (-) True G2331315
TU2666452 lncRNA downstream 127321 1290825 ~ 1291520 (-) True G2331353
TU2666499 lncRNA upstream 2069 1427175 ~ 1432004 (-) True G2331386
TU2666505 lncRNA upstream 25982 1451088 ~ 1470888 (-) False G2331390
TU2666506 lncRNA upstream 25982 1451088 ~ 1481490 (-) False G2331390
TU2666507 lncRNA upstream 25982 1451088 ~ 1481490 (-) False G2331390
TU2666508 lncRNA upstream 25982 1451088 ~ 1471077 (-) True G2331390
XM_036971908.1 mRNA downstream 25125 1385260 ~ 1393716 (-) False LOC110513025
XR_005041625.1 mRNA downstream 25125 1385260 ~ 1393716 (-) True LOC110513025
XM_036971914.1 mRNA downstream 182023 1227411 ~ 1236818 (-) True LOC110511394
XM_036971913.1 mRNA downstream 182029 1227411 ~ 1236812 (-) False LOC110511394
XM_036971916.1 mRNA downstream 183252 1227411 ~ 1235589 (-) False LOC110511394
XM_036971874.1 mRNA upstream 469261 1894367 ~ 1896708 (-) False LOC118946762
XM_036971881.1 mRNA upstream 509400 1934506 ~ 1953566 (-) False LOC110511350
LOC118946763 mRNA upstream 584434 2009540 ~ 2012481 (-) True LOC118946763
XM_036971895.1 mRNA upstream 729629 2154735 ~ 2166885 (-) False LOC110497191
XM_021573179.2 mRNA upstream 729629 2154735 ~ 2176616 (-) False LOC110497191
TU2666379 other downstream 183297 1226616 ~ 1235544 (-) False G2331305
TU2666384 other downstream 183297 1226616 ~ 1235544 (-) False G2331305
TU2666385 other downstream 183297 1226616 ~ 1235544 (-) False G2331305
TU2666390 other downstream 183297 1226616 ~ 1235544 (-) False G2331305
TU2666392 other downstream 183297 1226616 ~ 1235544 (-) False G2331305
TU2666680 other upstream 450601 1875707 ~ 1876952 (-) False LOC118946762
TU2666691 other upstream 525991 1951097 ~ 1993315 (-) True G2331536
TU2666711 other upstream 612781 2037887 ~ 2039068 (-) True G2331554
TU2667001 other upstream 1116936 2542042 ~ 2544584 (-) True G2331771
TU2667251 other upstream 1381866 2806972 ~ 2808389 (-) False G2331942

Expression Profile


XM_036971912.1 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.25.
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XM_036971912.1 Expression in each Bioproject

Bar chart with 11 bars.
XM_036971912.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 14.
End of interactive chart.