RNA id: TU2666775



Basic Information


Item Value
RNA id TU2666775
length 546
lncRNA type sense_over
GC content 0.47
exon number 2
gene id LOC110497191
representative True

Chromosome Information


Item Value
chromosome id NW_023493658.1
NCBI id JAAXML020000857.1
chromosome length 2864942
location 2154735 ~ 2176616 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTCGTACAACTACCCCTCCGATCACCTCTCGCTGGTGTGTGACTTCAGCTTTAAaaagcaggaggaggagtgaagaggatCATATGGACATTTGATTGACAGAACGAGGGATGGAGGGAAtagaagCGCCACTGTCCCTCTGAGTCCGAACCCATCTCTCTGGAGTATGATGactggagaacaggaggagggaaATAGCGAGGAGACTACCCGCTTGGTGTGAGCTTACTTTTCAGAAGTCATGTTATCGATTTAAAACACTGATTGAAGGAGAGACCGAGAGGAATGGACTGGACAGACTGCTGAAACTAGGCTCTATGGTTCCTGTCTACAGTAGAGGTGCTGTTGTTGTACCTCTGACACTGTGATGATTGCACCCTACCTGCTACTATTGTCCTGGGCTGCTTCAGTTCAAGAGGGTAATCCTACAGAGCAGGATCAAGGGGTTAGCCGGCTAACTAGGAGTTAACTTGCCTAAATATTCTGAAGTATTACAGTGCAttttgggaagtattcagacaccttgactttcttcaaaatgttgtt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2666776 lncRNA downstream 1372 2153270 ~ 2153617 (-) True G2331593
TU2666788 lncRNA downstream 2199 2150889 ~ 2152790 (-) True G2331600
TU2666718 lncRNA downstream 6035 2146508 ~ 2148954 (-) False G2331557
TU2666717 lncRNA downstream 6035 2146961 ~ 2148954 (-) True G2331557
TU2666754 lncRNA downstream 44611 2108902 ~ 2110378 (-) True G2331584
TU2666789 lncRNA upstream 13390 2168945 ~ 2169172 (-) True G2331601
TU2666790 lncRNA upstream 14724 2170279 ~ 2172050 (-) True G2331602
TU2666795 lncRNA upstream 25394 2180949 ~ 2181359 (-) True G2331606
TU2666801 lncRNA upstream 59711 2215266 ~ 2216876 (-) True G2331612
TU2666803 lncRNA upstream 62946 2218501 ~ 2219150 (-) False G2331613
LOC118946763 mRNA downstream 142508 2009540 ~ 2012481 (-) True LOC118946763
XM_036971881.1 mRNA downstream 201423 1934506 ~ 1953566 (-) False LOC110511350
XM_036971874.1 mRNA downstream 258281 1894367 ~ 1896708 (-) False LOC118946762
XM_036971910.1 mRNA downstream 728653 1418841 ~ 1426336 (-) True LOC110518942
XM_036971909.1 mRNA downstream 728655 1418841 ~ 1426334 (-) False LOC110518942
XR_005041624.1 mRNA upstream 83407 2238962 ~ 2239607 (-) False LOC118946770
TU2666711 other downstream 115921 2037887 ~ 2039068 (-) True G2331554
TU2666691 other downstream 161674 1951097 ~ 1993315 (-) True G2331536
TU2666680 other downstream 278037 1875707 ~ 1876952 (-) False LOC118946762
TU2666391 other downstream 729910 1226616 ~ 1425079 (-) False G2331305
TU2667001 other upstream 386487 2542042 ~ 2544584 (-) True G2331771
TU2667251 other upstream 651417 2806972 ~ 2808389 (-) False G2331942
TU2667254 other upstream 651417 2806972 ~ 2808389 (-) False G2331942
TU2667255 other upstream 651417 2806972 ~ 2808389 (-) False G2331942
TU2667256 other upstream 651417 2806972 ~ 2808389 (-) True G2331942

Expression Profile


TU2666775 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
End of interactive chart.

TU2666775 Expression in each Bioproject

Bar chart with 14 bars.
TU2666775 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 12.
End of interactive chart.