RNA id: TU2666383


Basic Information

Item Value
RNA id TU2666383
length 2724
RNA type TUCP
GC content 0.43
exon number 6
gene id G2331305
representative False

Chromosome Information

Item Value
chromosome id NW_023493658.1
NCBI id JAAXML020000857.1
chromosome length 2864942
location 1225408 ~ 1425079 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGATAATGTGAGGACGTCCCATCGCCGACTGTCATACATGGAAATCCGCAGTGTCGTCTAGCACATAACAACGTTATCCACACTAAACCCCGGCTAACGTTTTGACACAATATTGTTATTATATCGAAGGGGAACAGAGGAACTGCAGTCCTGCTCACCAAACAGGACAACGAGGACTTCACCATGAACTGTCACATGGATGgagacatggagaaccaggtagagatggaggagaagacgAGGCTCATCAACCAGGTGCTGGAGCTACAACACACACTGGAAGACCTGTCAGCACGTGTGGATGCGGTCAAAGAGGAGAACCTGAAGTTGAAGTCGGAGAACCAGGTTCTAGGCCAGTACATCGAGAACCTCATGTCGGCCTCCAGCGTGTTCCAAACCACCGACAACAAGAGCAAACGGAAGTAACCCACGGCGACCAAGGGGAGTTGAGACCACCTACAATAGCCTGGTAGCAGGTCTGTTTGTTGCCGACACAAACCGTAGGCATGATGGCACagacagactggcactcaggctacctGCAACATCTCCTCTCCCAAATGACAGCAGAGGAGGTAGAAGATGTTTGTGACCACAGTTCTAGGGACGGATATGGCCGTGTTCCAAATGGCAGATTATttcctaagtagtgcactatgtagtgcaCAGAATGCCATaagctctggttaaaagtagtgtactatgtagggaatagaatgccatgagctctgattaaaagtagtgtactatgtagggaataggatgccatgagctctgattaaaagtagtgtactatgtagagaataggatgccatgAGCTCTGATTAAAAGTAGTGTACAGAATGCCATaagctctggttaaaagtagtgtactatgtagggaataggatgccatgagctctgattaaaagtagtgtactatgtagagaataggatgccatgagctctgattaaaagtagtgtactatgtagggaataggatgccatgagctctgattaaaagtagtgtactatgtagggaataggatgccatgagctctagttaaaagtagtgcacaggATGCCATGAGCTCTgattaaaagtagtgtactatgtagggaatagaatgccataagctctagttaaaagtagtgtactatgtagggaataggatgccatgaGCTCTGATTAAAAGTATTGTACTATGTAGAGTagtctgatcctagatctgtggttagggggCAACTTCTAATTCCAGACCCCAAAATCCTCCCTCCACTCCAACTACACCCCTAAGAGTCCAGTTTACATTCTTGTTTGACCTCTTTTTACCCTCCTCCtaacataaccccccccccccccccctgacataATTTAACTGGTTTTATAATTCATCTTATAATACTGTTTTGTGTTGTCATGTCAACGGCATCTCTAATGAGTTATGACATCAGACCTTTTCATGTTGATGACTGGTTGGATATGAATATGGCCAAACTCCTGGCCCCAAAATATGAATCTAACATATTGATGACTGGTTAATACTGGTTTGATATGAATATGGCCAAACTCCTGGCCCCCAAAATATGAATCTAACATATTGATGACTGGTTAATACTGGTTGGATATGAATATGGCCAAACTCCTGGCCCCCAAAATATGAATCAAACATATTGATGACTGGTTAATACTGGTTGGATATGAATATGGTCAAACTCCTGGCCCCCAAAATATGAATCTAACATATTGAATGACATGTCAATGTAATACAATAATATAATAACGCATCCCATCGACTGTTCtctcatctgattggtcaaaaggttACTAAGTGTCTGTTGTTTTTAAATTATTGATCAACACAAACATTATGAAATATGATTCTgtatgatgtttttttttttttaaaagcagtaCTACTAAGATACTCCGATGTGTGTTGTCGTCCCTGGTATGCTACTCATTCCACCAGGAAGGGGATTCATATCGTCACCATGGAGTGCTGTGTGGAGTCAGTAGGGGAAGGACAAAGAACAGTGAACGTGTATTCTGCTGTACATAACAAACGATGCCCTCGTGAATGAAACCCTGGACTAGGGTCAAGTTACACTACAGGGTGAGACGGCCTCCTTTACCTATGATGGTggagcgagggaggagaggagagagctctGCTTTTTACAGTTAAGAACCTTGAGTAGTATTGATTAGAACACTCAGGCTGTAGAACACTCCGGAAGGTTCCGTCAGTGCATTAACACAGAGCTGCTGATAAGGAACGTTGTTATTCCTGCTTATGGTAATGGACTGTGGAAGCATGACTGTGCTGTCCTAGGCTGGTTATAGTAATGGACTGTGGAAGCATGACTGTGCTGTCCTAGGCTGGTTATAGTAATGGACTGTGGAAGCATGACTGTGCTGTCCTAGGCTGGTTATAGTAGAGAGAAATAAGGTACGGGTACCAGCAAGAGATTCTATGAGAGCCTTTATCAGGGATGTGATCAGGACAACATGAACAGTTGGGGTTTTGGCTAGGAGATAGCTAGGTCAGTTTCAATTCTATTTGAATAGAGGACAAAATGGTCAGAAATGCCTAATTTAAAAATCAGGAAGAAACACAACACTCAATTGTACGGAGATCGGCGTTTTGAGCAAGAGGTTCTACCAGAGAACCATTCTGTGGTTCTATTGGTTCCAGGTGCTAAAGGAAAAGATTGGGGAATATTGAGATGATTCCACTGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TU2665811 lncRNA downstream 34886 1184934 ~ 1190522 (-) False G2330925
TU2665807 lncRNA downstream 34886 1186971 ~ 1190522 (-) True G2330925
TU2665822 lncRNA downstream 36959 1185643 ~ 1188449 (-) True G2330931
TU2665818 lncRNA downstream 37799 1183475 ~ 1187609 (-) True G2330927
TU2665814 lncRNA downstream 39322 1174887 ~ 1186086 (-) False G2330925
TU2666499 lncRNA upstream 2096 1427175 ~ 1432004 (-) True G2331386
TU2666505 lncRNA upstream 26009 1451088 ~ 1470888 (-) False G2331390
TU2666506 lncRNA upstream 26009 1451088 ~ 1481490 (-) False G2331390
TU2666507 lncRNA upstream 26009 1451088 ~ 1481490 (-) False G2331390
TU2666508 lncRNA upstream 26009 1451088 ~ 1471077 (-) True G2331390
XM_036971892.1 mRNA downstream 23378 1192764 ~ 1202030 (-) False LOC110513705
XM_036971897.1 mRNA downstream 112032 1098558 ~ 1113376 (-) True LOC110513306
XR_005041621.1 mRNA downstream 146834 1077674 ~ 1078574 (-) False LOC110513304
XM_036971898.1 mRNA downstream 147040 1077670 ~ 1078368 (-) False LOC110513304
XM_036971867.1 mRNA downstream 275920 806485 ~ 949488 (-) False LOC118946760
XM_036971874.1 mRNA upstream 469288 1894367 ~ 1896708 (-) False LOC118946762
XM_036971881.1 mRNA upstream 509427 1934506 ~ 1953566 (-) False LOC110511350
LOC118946763 mRNA upstream 584461 2009540 ~ 2012481 (-) True LOC118946763
XM_036971895.1 mRNA upstream 729656 2154735 ~ 2166885 (-) False LOC110497191
XM_021573179.2 mRNA upstream 729656 2154735 ~ 2176616 (-) False LOC110497191
TU2666377 other downstream 23422 1200147 ~ 1201986 (-) False LOC110513705
TU2666376 other downstream 23422 1200512 ~ 1201986 (-) True LOC110513705
TU2665469 other downstream 406815 807938 ~ 818593 (-) True LOC118946760
TU2665505 other downstream 540578 664211 ~ 684830 (-) True G2330705
TU2665500 other downstream 590529 633911 ~ 634879 (-) True G2330702
TU2666680 other upstream 450628 1875707 ~ 1876952 (-) False LOC118946762
TU2666691 other upstream 526018 1951097 ~ 1993315 (-) True G2331536
TU2666711 other upstream 612808 2037887 ~ 2039068 (-) True G2331554
TU2667001 other upstream 1116963 2542042 ~ 2544584 (-) True G2331771
TU2667251 other upstream 1381893 2806972 ~ 2808389 (-) False G2331942

Expression Profile

TU2666383 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
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TU2666383 Expression in each Bioproject

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TU2666383 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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