RNA id: TU2669659


Basic Information

Item Value
RNA id TU2669659
length 361
lncRNA type intronic
GC content 0.40
exon number 2
gene id G2333605
representative True

Chromosome Information

Item Value
chromosome id NW_023493659.1
NCBI id JAAXML020000263.1
chromosome length 2745910
location 2380096 ~ 2380670 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAACGCACAAACAAAACGGAGGtgtttggatataaagagggactttatcgaacaaaactaacatttattgagtaaatgggagtcttgtgagtgcaaccatatggagatcatcaaaggtaagggattcattttatctctatttccgacttgtgtaactcttctacttggctggttactgtttgtaatgatttgtctgctgggtgctgttctcagataatcgcatggtatactttcgccgtaaagcctttttgaaatctgagaaCAAGAAGTTAATCCAGGTGTGTTAACCATCTCTCTAGGTGTCTATAGTAGAGTCCAGGTGTGTTAACCATCTCTCTAGGTGTGTATAGTAGAGTCCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2669638 lncRNA downstream 16528 2327282 ~ 2363568 (-) False G2333592
TU2669639 lncRNA downstream 16528 2362318 ~ 2363568 (-) True G2333592
TU2669649 lncRNA downstream 18190 2358933 ~ 2361906 (-) True G2333598
TU2669643 lncRNA downstream 31620 2343428 ~ 2348476 (-) True G2333594
TU2669628 lncRNA downstream 109880 2269973 ~ 2270216 (-) True G2333582
TU2669679 lncRNA upstream 25098 2405768 ~ 2407039 (-) False G2333615
TU2669680 lncRNA upstream 25098 2405768 ~ 2406366 (-) False G2333615
TU2669681 lncRNA upstream 25098 2405768 ~ 2406441 (-) False G2333615
TU2669677 lncRNA upstream 25376 2406046 ~ 2406366 (-) True G2333615
TU2669691 lncRNA upstream 58333 2439003 ~ 2439569 (-) True G2333625
XM_036971969.1 mRNA downstream 114699 2064703 ~ 2265397 (-) True LOC110512130
XM_036971970.1 mRNA downstream 212978 2064703 ~ 2167118 (-) False LOC110512130
XM_036971968.1 mRNA downstream 214751 2064703 ~ 2165345 (-) False LOC110512130
XM_036972015.1 mRNA downstream 389568 1954337 ~ 1990528 (-) False spock3
XM_036971944.1 mRNA upstream 14225 2394895 ~ 2399378 (-) True LOC118946996
XR_005041636.1 mRNA upstream 121218 2501888 ~ 2504138 (-) False LOC110515946
XM_036972033.1 mRNA upstream 125703 2506373 ~ 2537516 (-) False LOC118947017
XM_036972032.1 mRNA upstream 125703 2506373 ~ 2569376 (-) False LOC118947017
XM_036972035.1 mRNA upstream 125703 2506373 ~ 2583544 (-) False LOC118947017
TU2669598 other downstream 235079 2137966 ~ 2145017 (-) True G2333553
TU2669445 other downstream 638099 1741009 ~ 1741997 (-) True G2333429
TU2669366 other downstream 708123 1667991 ~ 1671973 (-) False G2333385
TU2669369 other downstream 708123 1667991 ~ 1671973 (-) True G2333385
TU2668874 other downstream 822382 1542422 ~ 1557714 (-) True LOC110515474
TU2669807 other upstream 226429 2607099 ~ 2607590 (-) True G2333706

Expression Profile