RNA id: TU2671517


Basic Information

Item Value
RNA id TU2671517
length 1089
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G2334899
representative True

Chromosome Information

Item Value
chromosome id NW_023493660.1
NCBI id JAAXML020000588.1
chromosome length 1886234
location 1680277 ~ 1684273 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgttggacaatgtaccaggtctacatcctgatataacagagctgtgttgttgaacaatgtaccaggtctacatcctgatataacagagctgtgttgaacaatgtaccaggtctacatcctgatacaacagagctgtgttgttggacaatgtaccaggtctacatcctgatataacagagctgtgttgttgaacaatgtaccaggtctacatcctgatacaacagagctgtgttgaacaatgtaccaggtctacatcctgatataacagagctgtgttggacaatgtaccaggtctacatcctgatacaacagagctgtgttgttggacaatgtaccaggtctacatcctgatacaacagagctgtgttgaacaatgtaccaggtctacatcctgatataacagagctgtgttgttgaacaatgtaccaggtctacatcctgatataacagagctgtgttgaacaatgtaccaggtctacatcctgatacaacagagctgtgttgaacaatgtaccaggtctacatcctgattcaacagagctgtgttgttggacaatgtaccaggtctacatcctgatacaacagagctgtgttgttgaacaatgtaccaggtctacatcctgatgaTTCAACAGGAAATAGGCTTCCTGGAAATGGAATGCATGTCCTGTATTCACACTCATAACATGGATTTAGTCAATAACCAATAGGAATAGAGTAGAAACCATTGAGCACATTTACAAGGAAATTAATTTTTTACTTAAAAGAAAGACACACTCTTAGACaataaaaaggtgctatctagaacctttaaGGGGTCtacagctgtccccataggagaacccttcggttgcaggtagaacccttatgggttccatgtagaaccctttctacagagggttctacatggaacaaaaaagggttctaactggaaccaaaaagggttctacctggaaccaaaagggttctacctggaaccaaaaagggttctacctggaacaaaaaaagggttctaccaggaAGCTATATTGAACTGAAGACGTGATAAAGACACTTGACACATCCCTCGTCTTTTCTCAGCAACCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2671503 lncRNA upstream 14362 1661008 ~ 1665915 (+) True G2334890
TU2671498 lncRNA upstream 30218 1649171 ~ 1650059 (+) True G2334885
TU2671495 lncRNA upstream 33635 1643848 ~ 1646642 (+) True G2334883
TU2671491 lncRNA upstream 49054 1626077 ~ 1631223 (+) True G2334880
TU2671488 lncRNA upstream 58351 1621501 ~ 1621926 (+) True G2334877
TU2671518 lncRNA downstream 415 1684688 ~ 1685150 (+) True G2334900
TU2671519 lncRNA downstream 904 1685177 ~ 1685747 (+) True G2334901
TU2671526 lncRNA downstream 7222 1691495 ~ 1691713 (+) True G2334905
TU2671698 lncRNA downstream 71767 1756040 ~ 1756328 (+) True G2335028
TU2671699 lncRNA downstream 73481 1757754 ~ 1758314 (+) True G2335029
XM_036972046.1 mRNA upstream 306910 1329818 ~ 1373367 (+) False LOC118947021
XM_036972045.1 mRNA upstream 306910 1329840 ~ 1373367 (+) False LOC118947021
XR_005041650.1 mRNA upstream 306910 1329840 ~ 1373367 (+) False LOC118947021
XM_036972072.1 mRNA upstream 604298 1066695 ~ 1075979 (+) False LOC110515544
XM_036972050.1 mRNA downstream 10664 1694937 ~ 1727043 (+) False LOC110515857
XM_036972049.1 mRNA downstream 10664 1694937 ~ 1736967 (+) False LOC110515857
XM_036972051.1 mRNA downstream 10664 1694937 ~ 1736967 (+) True LOC110515857
XM_036972088.1 mRNA downstream 95168 1779441 ~ 1835837 (+) False LOC110515110
TU2671317 other upstream 333496 1329888 ~ 1346781 (+) False LOC118947021
TU2670917 other upstream 679110 1000333 ~ 1001167 (+) False LOC110511817
TU2670699 other upstream 866549 813079 ~ 813728 (+) True LOC110513287
TU2670188 other upstream 1196761 483086 ~ 483516 (+) True G2333977
TU2670172 other upstream 1216286 459378 ~ 463991 (+) True G2333965
TU2671728 other downstream 95185 1779458 ~ 1835761 (+) False LOC110515110

Expression Profile