RNA id: TU2671526


Basic Information

Item Value
RNA id TU2671526
length 219
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G2334905
representative True

Chromosome Information

Item Value
chromosome id NW_023493660.1
NCBI id JAAXML020000588.1
chromosome length 1886234
location 1691495 ~ 1691713 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTATATTCACTGAAGCTGCAATTTTGTAACTCGGCTCTTTTCAGCTCTTCTAACAGTTATTTTTCTTTGTCTTGATGCAAAATTGTGCCGCAAAGCTGAAATCCCATTGACAATAGTTCCACTGATTAGCCGATTCGATTTTTCTACAAGCGAGTCACTCCAATAAAGGGAACTTTCTAACGTCGTAATTTAGATAAAAGAGACCCGAAGAATAAACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2671519 lncRNA upstream 5748 1685177 ~ 1685747 (+) True G2334901
TU2671518 lncRNA upstream 6345 1684688 ~ 1685150 (+) True G2334900
TU2671517 lncRNA upstream 7222 1680277 ~ 1684273 (+) True G2334899
TU2671515 lncRNA upstream 7865 1678979 ~ 1683630 (+) True G2334898
TU2671503 lncRNA upstream 25580 1661008 ~ 1665915 (+) True G2334890
TU2671698 lncRNA downstream 64327 1756040 ~ 1756328 (+) True G2335028
TU2671699 lncRNA downstream 66041 1757754 ~ 1758314 (+) True G2335029
TU2671706 lncRNA downstream 74092 1765805 ~ 1766612 (+) True G2335036
TU2671711 lncRNA downstream 80093 1771806 ~ 1772298 (+) True G2335041
TU2671723 lncRNA downstream 83423 1775136 ~ 1775584 (+) True G2335050
XM_036972046.1 mRNA upstream 318128 1329818 ~ 1373367 (+) False LOC118947021
XM_036972045.1 mRNA upstream 318128 1329840 ~ 1373367 (+) False LOC118947021
XR_005041650.1 mRNA upstream 318128 1329840 ~ 1373367 (+) False LOC118947021
XM_036972072.1 mRNA upstream 615516 1066695 ~ 1075979 (+) False LOC110515544
XM_036972050.1 mRNA downstream 3224 1694937 ~ 1727043 (+) False LOC110515857
XM_036972049.1 mRNA downstream 3224 1694937 ~ 1736967 (+) False LOC110515857
XM_036972051.1 mRNA downstream 3224 1694937 ~ 1736967 (+) True LOC110515857
XM_036972088.1 mRNA downstream 87728 1779441 ~ 1835837 (+) False LOC110515110
TU2671317 other upstream 344714 1329888 ~ 1346781 (+) False LOC118947021
TU2670917 other upstream 690328 1000333 ~ 1001167 (+) False LOC110511817
TU2670699 other upstream 877767 813079 ~ 813728 (+) True LOC110513287
TU2670188 other upstream 1207979 483086 ~ 483516 (+) True G2333977
TU2670172 other upstream 1227504 459378 ~ 463991 (+) True G2333965
TU2671728 other downstream 87745 1779458 ~ 1835761 (+) False LOC110515110

Expression Profile