RNA id: XR_005041773.1


Basic Information

Item Value
RNA id XR_005041773.1
length 592
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC118947117
representative False

Chromosome Information

Item Value
chromosome id NW_023493664.1
NCBI id JAAXML020000507.1
chromosome length 1504970
location 47623 ~ 51453 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTTACTAGGCTTCACAGACAACAGTCTGGTTACTAAGCTTCACAGACAACAGTCTGGTTACTAGACTTCACAGACAACAGTCTGGTTACTAAGCTTCACAGACAACAGTCTGGCGCTGTGAGGTTACTAAGCTTCACAGACAACAGTCTGGTGCTGTGAGGTTACTAGGCTTCACAGACAACAGTCTGGCGCTGTGAGGTTACTAGGCTTCACAGACAACAGTCTGGTTACTAGGCTTCACAGACAACAGTCTGGTTACTAGGCAACATTATGACACTCCTTCCTGTCTGAAAGCGTCCCCATGTTCAGAATTATATTTGCATTATTCTCACTCTAGTCTTTATTTACACATTTAATATTTCCTGGGAGCTGCTTGTGTCTGGATGGTGTGCTAACCTGTTTGACattataataatgtaatataattTATATCGTTTGTATTATCCTAACATAATATTGTGGGTCTTTTTATTCTGTAATTTCTTCCTGGGGGGTTTTATAggatccggggggggggggtatattaaCACCAgtctaaaccagcttcacctggagcTGCTATGGGACAATAAAATGGATCACTTTCAGCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2676837 lncRNA downstream 4530 42428 ~ 43093 (-) True G2338431
TU2676816 lncRNA downstream 12503 31812 ~ 35120 (-) True G2338426
TU2676827 lncRNA downstream 13382 26748 ~ 34241 (-) False G2338426
TU2677100 lncRNA upstream 8022 56322 ~ 56588 (-) True G2338585
TU2677101 lncRNA upstream 8388 56688 ~ 57377 (-) True G2338586
TU2677122 lncRNA upstream 53114 101414 ~ 102762 (-) True G2338601
TU2677132 lncRNA upstream 90947 139247 ~ 139794 (-) True G2338611
TU2677133 lncRNA upstream 114955 163255 ~ 163543 (-) True G2338612
XM_036972331.1 mRNA upstream 4845 53145 ~ 118089 (-) False LOC110511686
XM_036972342.1 mRNA upstream 199051 247351 ~ 293320 (-) True prpsap2
XM_036972304.1 mRNA upstream 398200 446500 ~ 512457 (-) False LOC110511701
XM_036972303.1 mRNA upstream 398200 446500 ~ 512472 (-) False LOC110511701
XM_036972305.1 mRNA upstream 411397 459697 ~ 512472 (-) False LOC110511701
TU2677097 other upstream 4134 52434 ~ 55362 (-) True LOC110511686
TU2677107 other upstream 136077 184377 ~ 186655 (-) True G2338590
TU2677207 other upstream 329879 378179 ~ 378883 (-) True G2338672
TU2677193 other upstream 414232 462532 ~ 479061 (-) True LOC110511701
TU2677280 other upstream 521527 569827 ~ 570378 (-) True G2338725

Expression Profile