RNA id: TU2677097


Basic Information

Item Value
RNA id TU2677097
length 1259
RNA type TUCP
GC content 0.57
exon number 2
gene id LOC110511686
representative True

Chromosome Information

Item Value
chromosome id NW_023493664.1
NCBI id JAAXML020000507.1
chromosome length 1504970
location 52434 ~ 118089 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGGGTCTCTCCTCCCTGACTAGTGGTACCGGGGACCTGTTTGACCCTCTGCCCAACAGGAAGACCCCAGAGTCCTTCCTGGGTCCTAATGCAGCATTGGTCAACCTGGACTCACTGGTCACCAAGCCTCCTCAGCCTGCTCCTATTGTCAACCCCTTCCTCGCTGCCGCAGGAGCCGCCCCTGTAGCCGCCCCCCAGGCCAACCCCTTCCAGATGGGCCAGCCTAACCCCCCTACCCTAAACCAGATGAGAGTCAGCCCTATGCCAGGCCTGAGTCTGGGAGGGGGAGCAGGGTTCAGCAGCTTGTCCTCCATGGTAGACCCTCTGCCCCCCCTGACGGGCCACATGGTGCCcggggttggagggatggggggtTTCCCGGCCTCTATGCCTCTGACCCAGCCCCTCTTCGGCTCAGCTCTGCCCCCCACAGCTGGCACACAGCCCCCCGGGACCACTAACCCCTTCTTGTTGTGAGGAACGCCtcaactacacccccccccccccccccccaacaagacAACACCCCTGGACTCCTCTCCTGTTtttccaccccccctctcctcttcctccctcttcctctctctcttcctctctcccctctgctcttcctctctctcttcctctctctcttcctctctcccctctgctcttcccctctccactctgctcttcccctctccactctgctcttcctctctcccctctccctctctgttctctctctcctcttcctttctctctctcctcttcctttctctctctcctcttcctttctctctctctcctctttctttctctctcctctctctcctcttcctctctctcctcttcctctctctcctctcccctcttcctctctctcctctcccctcttcctctctcccctctgctcttcctctctctctcctcttcctctctctcctcttctcttcctctctcctctccctctgtcttatATCAGATACTGTATCCTGTAGACAGTATTCCTGGCTGTTCTGACTGTTTTTAATGCTAGTCTGATCATAGAGTGAATCTAACTAAACTTGTACaaccccaggtgtgtgtgtgtgtactaagcAGGGATTTTGCACATGCTTAATTAGCTGTGACTGTTGCTTCACCGTTAGTCCTTAGCTGGAGACGACTCCACTGCCAGGTACACTGTGTTACTACCCCCCCCACCCCGTTACCGGCCACAACTTGTGAGGTCACTGCTTAGCGACCTATGACCCTGACACACAGCCACATGTGaattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2677075 lncRNA downstream 3592 47725 ~ 48842 (-) False LOC118947117
TU2677076 lncRNA downstream 3592 47725 ~ 48842 (-) False LOC118947117
TU2677078 lncRNA downstream 3592 47725 ~ 48842 (-) False LOC118947117
TU2677079 lncRNA downstream 3592 47725 ~ 48842 (-) False LOC118947117
TU2677080 lncRNA downstream 3592 47725 ~ 48842 (-) False LOC118947117
TU2677100 lncRNA upstream 960 56322 ~ 56588 (-) True G2338585
TU2677101 lncRNA upstream 1326 56688 ~ 57377 (-) True G2338586
TU2677122 lncRNA upstream 46052 101414 ~ 102762 (-) True G2338601
TU2677132 lncRNA upstream 83885 139247 ~ 139794 (-) True G2338611
TU2677133 lncRNA upstream 107893 163255 ~ 163543 (-) True G2338612
XR_005041773.1 mRNA downstream 4134 47623 ~ 48300 (-) False LOC118947117
XR_005041772.1 mRNA downstream 4147 47623 ~ 48287 (-) False LOC118947117
XM_036972342.1 mRNA upstream 191989 247351 ~ 293320 (-) True prpsap2
XM_036972304.1 mRNA upstream 391138 446500 ~ 512457 (-) False LOC110511701
XM_036972303.1 mRNA upstream 391138 446500 ~ 512472 (-) False LOC110511701
XM_036972305.1 mRNA upstream 404335 459697 ~ 512472 (-) False LOC110511701
XM_036972314.1 mRNA upstream 725404 780766 ~ 808870 (-) True LOC110517482
TU2677092 other downstream 981 47623 ~ 51453 (-) False LOC118947117
TU2677107 other upstream 129015 184377 ~ 186655 (-) True G2338590
TU2677207 other upstream 322817 378179 ~ 378883 (-) True G2338672
TU2677193 other upstream 407170 462532 ~ 479061 (-) True LOC110511701
TU2677280 other upstream 514465 569827 ~ 570378 (-) True G2338725
TU2677314 other upstream 608175 663537 ~ 666097 (-) True G2338752

Expression Profile